Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:6933079-6934061[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.066 1.9 9.9 2.7 2 23 64 85 63 85 0.95

2 9 4.6e-05 0.0013 19.9 4.2 1 23 91 113 91 113 0.98

3 9 0.00092 0.027 15.8 1.3 1 23 119 142 119 142 0.96

4 9 0.00024 0.0071 17.6 2.6 1 23 148 170 148 170 0.99

5 9 0.00044 0.013 16.8 1.0 2 23 177 198 177 198 0.97

6 9 0.00073 0.021 16.1 2.2 1 23 204 226 204 226 0.97

7 9 0.00087 0.025 15.9 3.1 1 23 232 254 232 254 0.98

8 9 5.6e-05 0.0016 19.6 3.3 1 23 260 282 260 282 0.97

9 9 0.00031 0.0089 17.3 2.6 1 23 288 310 288 310 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.066	1.9	9.9	2.7	2	23	64	85	63	85	0.95
2	9	4.6e-05	0.0013	19.9	4.2	1	23	91	113	91	113	0.98
3	9	0.00092	0.027	15.8	1.3	1	23	119	142	119	142	0.96
4	9	0.00024	0.0071	17.6	2.6	1	23	148	170	148	170	0.99
5	9	0.00044	0.013	16.8	1.0	2	23	177	198	177	198	0.97
6	9	0.00073	0.021	16.1	2.2	1	23	204	226	204	226	0.97
7	9	0.00087	0.025	15.9	3.1	1	23	232	254	232	254	0.98
8	9	5.6e-05	0.0016	19.6	3.3	1	23	260	282	260	282	0.97
9	9	0.00031	0.0089	17.3	2.6	1	23	288	310	288	310	0.97

Sequence Information

Coding Sequence: ATGGAAAATTCATGTGATTCAAGTACCAGTTGTAAAGTTAAAATAGAAGAGTTGGAAGATGTGAAGTTTAATTTAGAAGATTTGCATCATTCGATAGATATTAAGGAAGAATTACATCAGGAAAAAACTGAACCTCAGGATTGTGGTTTGAACTTTTATTCATTAACTCAAACGAATAAAAAACAGTTAGTTTGTCAATTTTGTGAGTATAAATGTACAAGCATATCGCGTTTAAAAAGGCACTTGTATATTCACACCGGTGAAAAACCATTTGAGTGTAATATTTGTGACTATAAATGTAGGCAAAAGTCGGGTTTAAAAGATCATTTTAGAACTCACACCGGCGAAAAACCATACGCGTGTGGTATTTGCGACTATAAATGCGCCCTAAAGAGGAATTTAAAAAACCATATTATGAATAATCACTCGGGTAAAAAACCGTACGTGTGCGACATTTGTGACTATAAATTTGCACTAAAGTCAAGTTTAAAGTGTCATTTAAGAACTCACAACGGTGAAAAGTTGGGCACTTGTGACATTTGTGGTTATCAGTGCTCAAATGTTTCATCGTTAAAATATCATTTGATGATTCACAACGGTGAAAAACCGTACGCTTGTGATATTTGTGACTATAAGTGCGCAAAAAAATCGTTGTTAAAATATCATTCGAGAGTTCACACTGGTGAAAAACCGTACGCATGTAAAATATGTGACTATAAATGTGCACGGTATTTATATTTACGGAATCATTTGAGATCGCACACCGGCGAGAAACCGTTCGCTTGTTCTATGTGCAAATCTTCATTTTCACAAACTTGGCATTTAAAAAGGCACATGAAAATTCACACCGGTGAAAAGCCATTTGCGTGTAATATTTGTGAATATAAATGTGCACAAAACTACAGTTTACAATCGCATTTAAAAAGGCACACAAAAAAATCAGAAAGTAAATAA
Protein Sequence: MENSCDSSTSCKVKIEELEDVKFNLEDLHHSIDIKEELHQEKTEPQDCGLNFYSLTQTNKKQLVCQFCEYKCTSISRLKRHLYIHTGEKPFECNICDYKCRQKSGLKDHFRTHTGEKPYACGICDYKCALKRNLKNHIMNNHSGKKPYVCDICDYKFALKSSLKCHLRTHNGEKLGTCDICGYQCSNVSSLKYHLMIHNGEKPYACDICDYKCAKKSLLKYHSRVHTGEKPYACKICDYKCARYLYLRNHLRSHTGEKPFACSMCKSSFSQTWHLKRHMKIHTGEKPFACNICEYKCAQNYSLQSHLKRHTKKSESK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -