Rful010482.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:113756964-113763606[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.1 33 6.1 0.2 3 23 97 117 95 117 0.90 2 10 0.002 0.058 14.7 1.2 1 23 136 159 136 159 0.96 3 10 0.091 2.6 9.5 4.0 1 23 164 187 164 187 0.90 4 10 0.0018 0.052 14.9 0.6 1 23 221 243 221 243 0.99 5 10 0.0005 0.014 16.6 0.8 1 23 249 272 249 272 0.97 6 10 0.00021 0.0059 17.8 2.5 2 23 284 305 283 305 0.98 7 10 7.4e-05 0.0021 19.2 1.6 3 23 313 333 312 333 0.98 8 10 3.4e-06 9.9e-05 23.4 0.8 1 23 339 361 339 361 0.97 9 10 4.2e-06 0.00012 23.2 1.9 1 23 367 389 367 389 0.98 10 10 0.019 0.54 11.7 0.1 1 21 395 415 395 416 0.95
Sequence Information
- Coding Sequence
- ATGAAGCGTTTAAGAAAAACGAAGTATGACAAGAATTTAACAACGATCAACTCACTTTTAGCCACGTCCGAAATTTCCATATTTCCAGTTGTGAAGCAAGAAACGTTTACCGAGTTTGACGATTACCGAGAAGACGCAGTAAAATCTGAAGGGGGATCCACAAGAAAGACCAGAAAATCGAAAAAACCTACAGTGGGATATGTAAATCCATTCGTTTACACAAACTTGAAGAAGAACCGAAAAGCCAACAAGGAGTTGAAAGCGGAAGGAATTGGAAACAAATGGAACTGTATCATTTGCAACCAAACTTCCCAAAATAAGGAAGCTTTGATTAATCATTACGAACAACACAAAAACGAATGCGAAAATAGCACTGACCTAAAGAGCGAAAGCGTCTGCGATTATTTTCGTTGCGTAATTTGTTCTCGCGAATACACTTCCGCAAATGCTTACAAAAAGCACTTGAAGCTCAAGCACGGAGACAATTTTTACACTTGCGATACCTGCAGCAAATCGTACAAAAACGCCCTTTACCTTTGTCTTCACAATTTCAGCTCCCATCCAAACGACGGTCAATACGTCTGCATCGTCTGCAACTTTAAAACCGAATCCAAGGATATCATCAAATCGCACATTCAAGATCACGAAAATAATTCCAATTATCAGTGCGATGTTTGCGACAGAAAGTTTCTGACATCCGCTTGGTTTGAGGAGCATAAAAATACCCATGTTGGAGCAATGCCGTTCCAATGCGAAATATGCCTGCAAAATTTCCCAAACTCCCGTTACTTAACCATACACAGAAAGAGTTTACATTTGAATGCCACCTACACGAATTTGTTGACCAATAAGTGCGACTTGTGCGAAAAACAGTTCGCACATAAAAAAAGTTTGATTTTACACCTCCGTTCCCACACTGGAGAAAATACGGTTTTGTGCGATATGTGTGGGAAAAGCCTATCCAGTACGGAGCACCTCAGGCAACACTTACGTATTCACACAGGTTATAAGCCCCACATTTGTTCGGTTTGTGGTAAAGGATTTGCCAAAAAGAGTAATTTGACTTTGCACGAACGCGTACATAGTGGTGAAAAACCGTACGTTTGTGGGACGTGCGGGAAATGTTTTTCCCAACGTTCCACGTTGGTCATTCACGAACGTTATCATTCTGGTGATCGTCCGTACACTTGCCAATTATGTAAAAAGGGTTTTGTTGCTAAAGGACTTCTGGGAGCTCACTTGAAAAGTTGCTCCAGAATTCCGGTTTAA
- Protein Sequence
- MKRLRKTKYDKNLTTINSLLATSEISIFPVVKQETFTEFDDYREDAVKSEGGSTRKTRKSKKPTVGYVNPFVYTNLKKNRKANKELKAEGIGNKWNCIICNQTSQNKEALINHYEQHKNECENSTDLKSESVCDYFRCVICSREYTSANAYKKHLKLKHGDNFYTCDTCSKSYKNALYLCLHNFSSHPNDGQYVCIVCNFKTESKDIIKSHIQDHENNSNYQCDVCDRKFLTSAWFEEHKNTHVGAMPFQCEICLQNFPNSRYLTIHRKSLHLNATYTNLLTNKCDLCEKQFAHKKSLILHLRSHTGENTVLCDMCGKSLSSTEHLRQHLRIHTGYKPHICSVCGKGFAKKSNLTLHERVHSGEKPYVCGTCGKCFSQRSTLVIHERYHSGDRPYTCQLCKKGFVAKGLLGAHLKSCSRIPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271829;
- 90% Identity
- iTF_00271829;
- 80% Identity
- -