Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:6457350-6458264[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.8e-06 8e-05 23.7 1.1 1 23 53 75 53 75 0.97

2 9 0.00027 0.0077 17.5 0.7 1 23 81 103 81 103 0.98

3 9 0.0015 0.042 15.1 5.2 2 23 110 131 109 131 0.96

4 9 0.00026 0.0076 17.5 5.4 1 23 137 159 137 159 0.97

5 9 0.0045 0.13 13.6 0.6 1 23 165 187 165 187 0.98

6 9 8.1e-06 0.00023 22.3 3.4 1 23 193 215 193 215 0.99

7 9 0.00031 0.009 17.3 0.3 3 23 223 243 221 243 0.97

8 9 0.00012 0.0035 18.5 3.5 1 23 249 271 249 271 0.98

9 9 0.0099 0.29 12.5 8.8 1 23 277 299 277 299 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.8e-06	8e-05	23.7	1.1	1	23	53	75	53	75	0.97
2	9	0.00027	0.0077	17.5	0.7	1	23	81	103	81	103	0.98
3	9	0.0015	0.042	15.1	5.2	2	23	110	131	109	131	0.96
4	9	0.00026	0.0076	17.5	5.4	1	23	137	159	137	159	0.97
5	9	0.0045	0.13	13.6	0.6	1	23	165	187	165	187	0.98
6	9	8.1e-06	0.00023	22.3	3.4	1	23	193	215	193	215	0.99
7	9	0.00031	0.009	17.3	0.3	3	23	223	243	221	243	0.97
8	9	0.00012	0.0035	18.5	3.5	1	23	249	271	249	271	0.98
9	9	0.0099	0.29	12.5	8.8	1	23	277	299	277	299	0.98

Sequence Information

Coding Sequence: ATGGAAAACATTAACAATATTTTGAACAGAGTGGAAGTTAAAACGGAGGAATCCGAAGACATAAAATTCAATTTAGAAGAATTACATCATTCAATTGATATTAAGGAGAACGAGAGGCATGGAGAAGCATTAATAGAAGAGATACCAGAGAAATTGTTCGCTTGTGAGATTTGTGATCGTAAGTTTACTAAAAAATCATATTTAAATCAACATTTAATATCTCACACAAGGGAAAAACAATTTCCTTGTGAGATTTGTGAATACAAAGCTATTCGAAGATCACACTTAAGAGAGCATTTGAAAATTCACACAGGCGAAAAACCAATTCATTGTGAGTTTTGTGACTATAAATGTGCACGCAGATCAAGTTTAAACAGACATTTAACAACGCACACAGGGGATAAACCGTTTTTTTGTGATAACTGTGACTATAAATGTTCACGAAAGTCATCTTTAAATAATCATTTAAAAAATCACACAGGTGAAAAACCATTTGTTTGTGAGATTTGTGGCTATAAATGCACATCAGAGAGAATATTAAACATTCATCTGATAACTCATACCGGCGAGAAACCGTACGTGTGTAAAATTTGTGACCACAGGTATACACAAAAGTCAAGATTAACAATCCATTTAAGAACTCATATCGGCGTGAAGCCGTATGGATGTGAAATATGTGAATATGAAACTAATGAAAAGTCAAATTTAAAAAGACATTTGAAAATCCACACCGGCGAGAAACCGTTTGTATGTGATATATGTGAATATAAATGTACAGATAACGGAAAGTTAAAAAGACATTTCAGAACTCACACCGGTGAGAAACCGTTTGAGTGTGATATTTGTCACTATAAATGTTCACAAAAGGGAACTTTAACAAGGCATTGCAGAACTCACCGGAGAGAAATTGTTTAA
Protein Sequence: MENINNILNRVEVKTEESEDIKFNLEELHHSIDIKENERHGEALIEEIPEKLFACEICDRKFTKKSYLNQHLISHTREKQFPCEICEYKAIRRSHLREHLKIHTGEKPIHCEFCDYKCARRSSLNRHLTTHTGDKPFFCDNCDYKCSRKSSLNNHLKNHTGEKPFVCEICGYKCTSERILNIHLITHTGEKPYVCKICDHRYTQKSRLTIHLRTHIGVKPYGCEICEYETNEKSNLKRHLKIHTGEKPFVCDICEYKCTDNGKLKRHFRTHTGEKPFECDICHYKCSQKGTLTRHCRTHRREIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -