Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:4636912-4638007[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0017 0.05 14.9 3.0 1 23 73 95 73 95 0.97

2 9 0.00019 0.0056 17.9 2.4 1 23 101 123 101 123 0.98

3 9 4.3e-05 0.0013 20.0 2.0 1 23 129 151 129 151 0.98

4 9 4e-05 0.0012 20.1 1.8 1 23 157 179 157 179 0.98

5 9 2.6e-05 0.00074 20.7 1.5 1 23 185 207 185 207 0.98

6 9 0.00014 0.0039 18.4 2.5 1 23 213 235 213 235 0.98

7 9 0.00011 0.0031 18.7 2.3 1 23 241 263 241 263 0.96

8 9 3.9e-05 0.0011 20.1 3.0 1 23 269 291 269 291 0.98

9 9 0.00092 0.027 15.8 1.5 1 19 297 315 297 318 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0017	0.05	14.9	3.0	1	23	73	95	73	95	0.97
2	9	0.00019	0.0056	17.9	2.4	1	23	101	123	101	123	0.98
3	9	4.3e-05	0.0013	20.0	2.0	1	23	129	151	129	151	0.98
4	9	4e-05	0.0012	20.1	1.8	1	23	157	179	157	179	0.98
5	9	2.6e-05	0.00074	20.7	1.5	1	23	185	207	185	207	0.98
6	9	0.00014	0.0039	18.4	2.5	1	23	213	235	213	235	0.98
7	9	0.00011	0.0031	18.7	2.3	1	23	241	263	241	263	0.96
8	9	3.9e-05	0.0011	20.1	3.0	1	23	269	291	269	291	0.98
9	9	0.00092	0.027	15.8	1.5	1	19	297	315	297	318	0.94

Sequence Information

Coding Sequence: ATGGCTCAGGAGCTCTTACCTTCAGAGGAGGTGCATATTAAAGTAAACTTTGATGAAGGTTTAGAAATTCCATCTAATTTGAGTAGTTACAAAATTAAAACTGAAGATTTGAGGGACGTAAAATGTAAACTGGAAGATTTGCATCATTCGGTTGACCTTAAGGAAGACTGGGTTGAAGAATTAACACAAAAGTCACTAAGCACCGGAAATAAACCTTTTGCATGTGAAAGTTGTGACTATAAATGTGCATATAAAAGTTACTTAGACCGACATTTAAAAACACACACCGGCGATAAACCATTTCGTTGCAAAATATGCGACTATAAATGTGCAGAATCGTCACAACTAAAAATGCATGTAAAAATACACACCGGGGAAAAACGGTTCGTTTGTGAAGTTTGCGCGTATAAGTGCGCACAAAAGTCGAATTTAAAAATGCACTTAAGAACCCACACGGGCAAAAAATCATTTTCTTGTGACATATGCAGCTACAAATGTATACGAAATTCGGCCTTAAACGCGCATTTAAAAACTCACATTGGGGCGAAACCGTTCGTTTGTGTAATTTGTGACCATAAATACTCAACAAAAGCAAATTTAAATTTGCACTTAAAAAGTCACACCGGTGAAAAACCATTCGTTTGCAATTTTTGTGACTATAAAAGTGCGCAGAAATCGAAACTCAAAAGGCATTTGACAACACACACCGGGGAAAAACCGTTTCTTTGTGATATTTGTGATTTTAAATGCGCGCGAAATTCAAATTTACAAATGCACGTAAAAACTCACACCGGGGAAAAACCGTTTGTTTGTGAAATTTGTGACTATCGGTGTGTAGAAAAATCAAATCTAAACCGGCATTTTAAAACTCACACCGGGGAGAAGCCTTTTGTGTGCGCAATTTGTGACTATAAATGTGTTCAAAAATCTAGCTTAAAGAAGCACTTCGCGCGGAAAAACTGTTGA
Protein Sequence: MAQELLPSEEVHIKVNFDEGLEIPSNLSSYKIKTEDLRDVKCKLEDLHHSVDLKEDWVEELTQKSLSTGNKPFACESCDYKCAYKSYLDRHLKTHTGDKPFRCKICDYKCAESSQLKMHVKIHTGEKRFVCEVCAYKCAQKSNLKMHLRTHTGKKSFSCDICSYKCIRNSALNAHLKTHIGAKPFVCVICDHKYSTKANLNLHLKSHTGEKPFVCNFCDYKSAQKSKLKRHLTTHTGEKPFLCDICDFKCARNSNLQMHVKTHTGEKPFVCEICDYRCVEKSNLNRHFKTHTGEKPFVCAICDYKCVQKSSLKKHFARKNC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -