Rful007274.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:106613981-106615627[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.045 1.3 10.5 1.9 2 19 94 111 93 115 0.93 2 13 0.00031 0.0088 17.3 5.0 1 23 121 143 121 143 0.97 3 13 0.006 0.17 13.2 3.8 3 23 151 171 149 171 0.98 4 13 0.035 1 10.8 0.1 1 23 177 199 177 199 0.97 5 13 5.3e-05 0.0015 19.7 2.2 1 23 205 227 205 227 0.98 6 13 1.1 33 6.1 0.5 1 23 233 256 233 256 0.88 7 13 0.00066 0.019 16.2 0.3 1 23 262 284 262 284 0.98 8 13 0.0016 0.045 15.0 0.2 1 23 290 312 290 312 0.98 9 13 2.8e-05 0.00082 20.5 0.6 1 23 318 340 318 340 0.98 10 13 0.028 0.81 11.1 1.9 1 23 346 368 346 368 0.97 11 13 0.026 0.74 11.2 2.9 1 23 374 396 374 396 0.97 12 13 0.0013 0.039 15.3 3.3 1 23 402 424 402 424 0.97 13 13 0.0017 0.049 14.9 3.5 1 23 430 452 430 452 0.97
Sequence Information
- Coding Sequence
- ATGGAAAAACCATTTGATCGAATGATTGCAGAAGGCTCAATAAAGATAGAAAATGATGATTCCGATTTTGACAGTTTTGGTAAACATGAAAATGCTTTTCCAAAGTGGGAACTAAAAACAGAAAATATTGATGACCCTTTTCAAGATTTGCATCATTCCATCGATATTAAAGAAGAGAATTGTGAAGAAACACAGTTTTACAAGACCGAAGCAAAAGTCTTCAAGGAAGAAGCACAAGAAGAGTTGGTTAACGCAGTAACACATCCAGACGCAAAATTGTATTGTTTTATTTGCAATGCAGGATTTATTTCCAAGTCAAGTTTGAAAAGCCACTTCATATGCCATGATAGTAATAAGCCACATATCTGCCATATTTGTAATTTTAAAACTGCAAGAAAGAGCAACTTAAAACAGCATTTAAAAATTCATGAAGGTGCAAAGCCGTTCGGGTGCAAGATTTGTGATTATAGAACCTTTCGTCAGGGTTGCTTGAAACAGCATTTGAAAACTCACATCAAGGATAAACTTTTTGCATGCGAAATTTGCGCCTATAAAGCTGCCTACAAAGAATTGTTGAGGCAACATTTAAAAATTCATTTTGATAAAAAACAGTTCCAGTGTGAAATTTGTAATTACGCCACCATTCACAAAAGCAGCTTAAGAAAGCACCAAACAGTTCACTCTTTAGAAAGCCCATTTGCATGTGACATTTGTGATTATAAAGTTGCAAAGAAGAAAATGTTTTTGGGTCACTTTTTGAACAGTCACGCCGGTGAGAAACCATTTATTTGTCAAGTCTGTGGCCAAAGATCTACAAGTACTCGAGCATTGAAAGAGCATTTGAGAATTCACAACACCGAAAAACCGTTTCAGTGCGACACGTGTGGTTACAAGACCCCGACAAAAGGTCGATTAGCGGTGCACGTAAAAATTCACACGGGCGAAAAACCATTTGTATGTGAAATTTGCGGTTATAGATCGGCCAGGAAAAATTACTTAGAGAAGCATTTAAAAATGCATCGAGGTGAAAAATCGTTTGCATGTGATTTGTGTGATTATAAATCCGTGCTGAAAAATTGTTTACAGCGACATTTAAAAATACATACTGGTGAAAAGCCGTATGCGTGTGAAACTTGCGGTTACCGAACAGGACTAAAAAGTTGCTTAAAAAGACATTTTAAAATACATCGAAATGATAAACCATTTGCGTGTAAAATCTGCGATTTTAGAGCCATACACAAAAGTCACCTACAAATACATTTAAAAAGTCACACCGATGAAAAGCCATTTGCTTGTAGAATGTGCGATTTTAGTACCCCCCATAAATTTAATCTAAAGCGCCATGCGAAAACTCACACTAATAAGAAGTTGCCTCACGTGAAGTAA
- Protein Sequence
- MEKPFDRMIAEGSIKIENDDSDFDSFGKHENAFPKWELKTENIDDPFQDLHHSIDIKEENCEETQFYKTEAKVFKEEAQEELVNAVTHPDAKLYCFICNAGFISKSSLKSHFICHDSNKPHICHICNFKTARKSNLKQHLKIHEGAKPFGCKICDYRTFRQGCLKQHLKTHIKDKLFACEICAYKAAYKELLRQHLKIHFDKKQFQCEICNYATIHKSSLRKHQTVHSLESPFACDICDYKVAKKKMFLGHFLNSHAGEKPFICQVCGQRSTSTRALKEHLRIHNTEKPFQCDTCGYKTPTKGRLAVHVKIHTGEKPFVCEICGYRSARKNYLEKHLKMHRGEKSFACDLCDYKSVLKNCLQRHLKIHTGEKPYACETCGYRTGLKSCLKRHFKIHRNDKPFACKICDFRAIHKSHLQIHLKSHTDEKPFACRMCDFSTPHKFNLKRHAKTHTNKKLPHVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00273031;
- 90% Identity
- iTF_01294205;
- 80% Identity
- -