Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996557.1:6020001-6027401[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0089 0.26 12.7 0.0 2 20 34 52 33 54 0.93

2 14 9.2 2.7e+02 3.2 0.8 1 12 121 132 121 135 0.91

3 14 0.93 27 6.3 4.2 2 21 232 251 231 252 0.93

4 14 0.0016 0.046 15.0 2.6 2 23 267 288 267 288 0.98

5 14 0.0035 0.1 13.9 0.5 1 23 305 327 305 327 0.98

6 14 7.6 2.2e+02 3.5 0.7 1 14 358 370 358 379 0.71

7 14 0.00012 0.0035 18.5 1.6 1 23 385 407 385 407 0.98

8 14 0.55 16 7.0 0.7 3 21 415 433 413 434 0.92

9 14 0.00013 0.0039 18.4 1.9 1 23 441 463 441 463 0.97

10 14 4.8e-06 0.00014 23.0 2.9 1 23 469 491 469 491 0.97

11 14 0.0048 0.14 13.5 5.7 1 23 497 519 497 519 0.98

12 14 2e-05 0.00057 21.0 0.5 1 23 525 547 525 547 0.99

13 14 7.8e-05 0.0023 19.1 0.6 1 23 551 573 551 573 0.98

14 14 0.00044 0.013 16.8 0.3 1 23 581 604 581 604 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0089	0.26	12.7	0.0	2	20	34	52	33	54	0.93
2	14	9.2	2.7e+02	3.2	0.8	1	12	121	132	121	135	0.91
3	14	0.93	27	6.3	4.2	2	21	232	251	231	252	0.93
4	14	0.0016	0.046	15.0	2.6	2	23	267	288	267	288	0.98
5	14	0.0035	0.1	13.9	0.5	1	23	305	327	305	327	0.98
6	14	7.6	2.2e+02	3.5	0.7	1	14	358	370	358	379	0.71
7	14	0.00012	0.0035	18.5	1.6	1	23	385	407	385	407	0.98
8	14	0.55	16	7.0	0.7	3	21	415	433	413	434	0.92
9	14	0.00013	0.0039	18.4	1.9	1	23	441	463	441	463	0.97
10	14	4.8e-06	0.00014	23.0	2.9	1	23	469	491	469	491	0.97
11	14	0.0048	0.14	13.5	5.7	1	23	497	519	497	519	0.98
12	14	2e-05	0.00057	21.0	0.5	1	23	525	547	525	547	0.99
13	14	7.8e-05	0.0023	19.1	0.6	1	23	551	573	551	573	0.98
14	14	0.00044	0.013	16.8	0.3	1	23	581	604	581	604	0.97

Sequence Information

Coding Sequence: ATGGGATCATTACAATTGGCCTGCCCTTTGTGCTGTAGTGAAACTTTTCCATGCCATAATTCTTTAAAATATCACTTGCTTAGTATTAACGATAACTTGAATTGTCCCATTTGTAATAAAAAGTTTGAGCAGGTTTTCGAACTTGCAATACATATTGGCAGAAAATGTCTCGAAGGTGATAACGACCAAGTTATTTCTGAAACCGAGACAATTTTAAAAGAATCGAACATCGATAATTGTACCGATAATAATTCATCGGATAACGTTATAACAGAAGCTAGAATAATTTTAACTGATGAAAATATGGAGGAAAGTGAAGCAGTTGTAGCTGACGAAGATGATGAAAGTACTAAAGATTTGTATTATTGCTCCAGTTGTGACACCAACTTCACTTCCATCGAAAAGCATATTTTTGATTTTCATCAAGGTCACGAAGTGCTTTTGGAGTCAGAAACTGACGATCAAGTGGACGAAGAAGAAGTATCCACTGATACTGTTTTAATAGCAAAAGAAGAAGTAAATTTAGATGAGGATCCTGTAGAACTTATGACTCCCGAAGAAATATTAAATACTGTGCAAGAGGAGGATTGTTTTGACAAAGACGGACGATTGTTTACACGTAAAATTGTTAAAATTGAAAAGTTTTGGGATGAAAAGGAATCCACAGTAGAACAAAATATTGTACAACTTTTGCAATGTTCAAAATGTAAAGTCAAGTTTCAAACGCCTGAATTATATTGTAAACATACCTGCGTTACACAGTTAGTTCAGAGCGAAAATAAGAAACAAAAATACAGGAGATGTCGAATATGTAGTGCATGTTTTGTTAATTCGTATTTTCTGTCGGTTCATATGAAAACCCACAAAACAGAAACTGTTACGACTAAATCAGATATCGATCCTCATCCACCGTTTATTTGTGAAATTTGTAACACCGAGTTTCCAGCATATAAATCTTTACGTTTGCACAAAAGGATGCATGAACCAATTAAGGCAAAAGACATCGAACCACCCGTTAATTACGATATGTTAGGGGAAGAAGTTTCTGCCGAGGATGGACTTAGAGAAATGTTTTTATGTGAGATTTGCAATAAACCATACGATAAGGAATACGAAGAAGCTCACAAGAAATTTCATAGTAAAGAAATAGATTACAATTGTGAAACATGTAATCGTAAATTTTTCTCAAAAGAAAACCTAGACATGCATATGCGCGCTCACGTAGATTCCAAAAAATTTGGATGTTCTTATTGTAAAAAGAAATTTTTAACTCAAGAAAAATTAGATGATCATTTATCCACAAAGTGTCAAGATCGACAATATGCATGCCAATATTGTGGAAGACGTTTCTCCAGGCCACACGAAAAAGTTAAACACGAACGAATACATACTGGAGAAAAACCACATATTTGCGAAATTTGTGGAAAAGCATTTCGCGTTAGTTATTGTTTAACACTTCATATGCGTACCCATTCTGGTACAAGACCTTATAAATGTGATTTTTGTGGCAAGAGATTTAAAGCTCATAGTGTGTACAATCATCACTTGTTGACTCATTCTGAAGATCGAAAATATAAGTGTCCTTACTGTCCAAAAACTTTCAAGACGGGTGTTCAATTGGCTGGCCATAAAAATACACACACTAAACCGTTCACCTGTACTAAATGCCAGAGACCATTTGCTTCCCTATATTCAGTGCGAGCTCACATGGAAACTCATGAACGTCAGAATAATTTGAAGTATCAATGTTTTCTGTGTGGTGCATCATATGCTAGGTCGTTTGCACTACGTGATCATATTAAAGAACAACATGCAGACGAACCAGAAGCTCAATCACGGATGGCAGTTGAAACTTCCATTCTAGATTCATCTGTTAATTATCCAAATGTTGAAAGTGTGGAAACGCACACTGCTATTTTACCTGACGGTGAAAATATATTAATTGACATTGGCGGTGAAGATGTAGAAAATATAAGTGTATAA
Protein Sequence: MGSLQLACPLCCSETFPCHNSLKYHLLSINDNLNCPICNKKFEQVFELAIHIGRKCLEGDNDQVISETETILKESNIDNCTDNNSSDNVITEARIILTDENMEESEAVVADEDDESTKDLYYCSSCDTNFTSIEKHIFDFHQGHEVLLESETDDQVDEEEVSTDTVLIAKEEVNLDEDPVELMTPEEILNTVQEEDCFDKDGRLFTRKIVKIEKFWDEKESTVEQNIVQLLQCSKCKVKFQTPELYCKHTCVTQLVQSENKKQKYRRCRICSACFVNSYFLSVHMKTHKTETVTTKSDIDPHPPFICEICNTEFPAYKSLRLHKRMHEPIKAKDIEPPVNYDMLGEEVSAEDGLREMFLCEICNKPYDKEYEEAHKKFHSKEIDYNCETCNRKFFSKENLDMHMRAHVDSKKFGCSYCKKKFLTQEKLDDHLSTKCQDRQYACQYCGRRFSRPHEKVKHERIHTGEKPHICEICGKAFRVSYCLTLHMRTHSGTRPYKCDFCGKRFKAHSVYNHHLLTHSEDRKYKCPYCPKTFKTGVQLAGHKNTHTKPFTCTKCQRPFASLYSVRAHMETHERQNNLKYQCFLCGASYARSFALRDHIKEQHADEPEAQSRMAVETSILDSSVNYPNVESVETHTAILPDGENILIDIGGEDVENISV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01294234;
90% Identity: iTF_01294234;
80% Identity: -