Rful017917.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- CYP6K1
- Assembly
- GCA_905340355.1
- Location
- HG996559.1:32127682-32139210[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.028 0.81 11.1 0.8 5 23 77 95 75 95 0.95 2 18 0.15 4.4 8.8 1.9 1 23 129 151 129 151 0.97 3 18 0.0024 0.069 14.5 3.3 1 23 157 179 157 179 0.98 4 18 1.3 38 5.8 4.2 1 23 185 207 185 208 0.67 5 18 0.085 2.5 9.6 6.0 1 23 213 235 213 235 0.96 6 18 0.0017 0.05 14.9 2.9 1 23 241 263 241 263 0.98 7 18 0.0002 0.0059 17.8 0.5 2 23 270 291 269 291 0.97 8 18 0.0026 0.076 14.4 1.5 1 23 342 364 342 364 0.98 9 18 0.00081 0.023 16.0 2.1 1 23 411 433 411 433 0.98 10 18 0.046 1.3 10.4 8.8 1 23 439 461 439 461 0.98 11 18 0.0018 0.052 14.8 0.8 2 23 497 518 496 518 0.97 12 18 0.021 0.61 11.5 5.2 1 23 524 546 524 546 0.98 13 18 0.012 0.36 12.2 2.9 1 23 552 574 552 574 0.97 14 18 0.0096 0.28 12.6 2.2 2 23 581 602 580 602 0.97 15 18 0.031 0.88 11.0 5.8 1 23 608 630 608 630 0.98 16 18 1.5 42 5.7 2.7 1 23 636 658 636 658 0.98 17 18 0.002 0.057 14.7 2.9 2 23 665 686 664 686 0.96 18 18 0.0018 0.052 14.9 1.4 2 23 693 714 692 714 0.97
Sequence Information
- Coding Sequence
- ATGGATCAAAGTCTGCATAAATTGCAAAATTTTGGAAACACTTGCAGTGGTTTACAAACATCAAATAATCTTAATAGCAGGATAGAAATTAAAATTGAACAAGAGGATTACATTGAAATCGAGTCGGAACCTTTGCATCATTCGATTGATATTAAAGAAGAAACTACGGTTCTTGAAGCTGAAGTGGATGAACAATATGAAGGTCAATTAAGTCAACAATTTGAATGTGTATGCAAATTAAAATTTACTGATAAATCTCAATTTGAAAAACATGCCAAAATTCATAGTGACACAAAATTATTTGAGCGTGAAGCTGATGACTTTAAGGATTTAACTAAAAACTGTTCGATACAACATTTTATGTCTCGCACCAGAGACAAACGCTTTGTCTGCCAAATTTGTGATTTTGACTGTTTAACAAAACAAAATTTGAAAGTACATTTAATGAATCATTTTGGTATAAAACCTTTTGAATGTGAGGTTTGTAATTTTAAATGTCCAACAAAATACTTTTTGAATCAACATATGCTGACTCATACCAGAGAGAGTCCTTTTGTCTGTGAAATTTGTAATTTTAAGTGTTCAACTAAGTACCGTTCAAAACAGCATCTAATGTCTCATACCGGAAGCGAACCCTTTGTCTGCGATATTTGTGACTTCAAATGTTCAACAAAGCACCGTTTGAAAAAGCATTTCATGGCTCATACTGGAGAAAAGCCTTTTTCATGTGAAATGTGCGATTTTAAATGTTCAGTAAAACAAAATTTGAAAGTACATTTAATGACCCATATCGGAGAAAAACCTCTTGTTTGTGAAGTCTGTGATTTTCAGTACCCAACAAAATATCTTTTAAAAAAACATCAAATGACTCACGTGGAGGAAAATCCATTTATCCATGAGATTTGTGACTTCAAGTGTACAACTACCGAAGAAAAGTCTTTTGCTGGTGAAGTAGTTGATTTGAAATATTCAACACAGCAAATTTTTACAGTACATTTAGTATCTCATCCCAGGGGAAAACCCTTTGTGTGCGAGGTTTGTGATTTTAAATGTCCAACAGAATATCTTTTAAAAAAGCATCTATTGAGTCATTCCAGGAAAAATCCACTTATCCGTGAAATTTATGACTTTAAGTGTTCAAGTATAGGAAAAAACACTTTAGCTGATTTTAAATATTCTACAAAGCAAAATTTGAAAGAAGAGCTAATGACTGATATCTGGGAAATTCCGTTTGTCTGTGAAATTTGTAACTTGAACTGTTCGACTAAATACTATTTGGAAGAACATTTAAAGTCTCATACCAAGGATAAATCCTTCACCTGTGCACTTTGTGGCTTCAAGTGTTCAACAAAACATTGCTTGAAACGACATTTAATGAGTCATCCCAGGAAAGAACCTCTCGGTTGTGAAATTTATGATTTTAAAAAATGTTCAACAAAGCAAAATCCAAAAGAACAGTTTAAGAGCCATTCCAAGGAAAAATCTATTGTATGTGAGATTTGTGATTTTAAGTGTCCATCAAAATATCTCTTGAAACAACACCTAATGATTCATGAAAAAGAAAAACTCTTTATGTGTGAAAATTGTAACTTTCAATGTTCAACAAAATACCGTTTGAAACGACATTTAATTACTCATACTGGGGAAAACTTTTTTAACTGTAAAATTTGTGGTTTTAAATGTTTAACAAAAGTAAACTTGAAAGTACATTTAATGACTCATATTGGTGAAACACCGTTAGTGTGTGAACTTTGTGATTTTAAATGTGCATCAAAATATCTTTTGAAACAACATCGACTGACTCATACCAGGGAAACACCCTTTAGCTGTAAAATTTGTGACTTTGAGTGTTCAACTAGATACCGTTTGAAACAACATCAATTTACGCACACCGGAGAAAAATCTTTTACTTGTGAAATTTGTAACTTTGATTGTTTAACAAAACCACGTTTGAAGCAACATTTAATGACTCACACCGGGAAAAAACCTTGTGCCTGTGAAATTTGTGATTTAGACTGTTCGACAAAACAAAATTTGAAAATACATTTAATGACTCATTTTGGTATGAAACCCTTAGTATGTGAGGTTTGCGATTTTAAATGTCCAACAAAATATCTTTTGAAACAACATCAAATTACTCATACCGGGGAAATACCTTTTGTCTGCCAAGAGTCTCCATCAATCTCTTTGTATATTGTTGGTACTGTAGTGGCAGCATTATTGTATCTATACTTACACTTAACGCGGAACTTTAAATATTGGAAAAATCAAAATATACTTTATGTACCGCCAAAAGTACTTTTTGGAAATATTTTTAGTATATGTACTTTTCAAAAATGCATGGGAGAATTTATGAACGACCTATACAACAAAAGCACATCGAAGATGCTAGGCTTTTTCGTATTCGACCAACCGTTTTTGTTTATTCGCGATCCAGATCTAATTAAACAATTACTAGTGAAAGATTTTGAATATTTCTCCGATAGAAGTGTTGTATCAAATGGAGAAAATGATCAGTTTGCTTCAAAAATGTTATTTACTGTTAAAAATCCTATGTGGAGACATTTGAGAATAAAATTAACTCCAGCATTTACAAGCGGTAAAATTAAAAATATGACTGAATTAATGACTGACGCATCTAAAGGATTGATTGAGTATATCGATAAAAAGTTGAGCCAAGCAAATAAATTTGATGCGAGAAACTTGACTATGATGTATACTACTGACGTTATTTCTTCTTGTGTATTTGGAATTGCAGCCAACTCCTTTAAAAACGAAAATGCGGAATTTCGTGCGGCGTCTAAAAAAGTATTTGAACTGACTCTAACAAGAGCAGTACATTCTGTATCATCTTTTCTTGCTCCAATGTTATTTAAGATATTTAAAATGAGGTTTCTTGATCCATCGGCAGTTGAATTTATGCAGAAAGCTTTCGTTGAAACTCTACATGAAAGAGAAAAGAGTAAAGAATACAGAGGAGATTTAATAGACATTTTGGTTCAAATTAAAAATAACGAAAAAAGTGGACCAGAATTTGATGAAAATACATTGGTGGCTCAAGCAATCCAATTCTTTGCCGCTGGTTTTGAATCTACCGGATCAACAACCTTTTATTGCTTGTACGAATTAAGTAAAAATAAAAGAGTACAAGAAAATCTTCGACAAGAAATTAAAAGTGTGCTAACAGGGCACAAACAAATTACGTACGATTTAATACAAGAAATGTCATATTTAGATATGGTTATACGTGAAATTCTCCGTAAATATCCCATATTGCCCTTTTTAGATAGACAGTGTACCAAAACGTACAGAATACCAGACACCGACGTAATTGTCAAAAAGGGTATGAAAGTTTATGTATCTCTTACAGGTCTTCACTACGACAGTAATTACTTTCCGGATCCTGAAAAATTTATACCAGAACGTTTTTCACCTGAAAATAAAAGTAATATTACAAGTAATGTCTATATGCCATTTGGACAAGGTCTACATAGTTGTATAGGTGAAAGATTTGCGTTGATGAGCGTAAAAGTTGGAATTACATCTCTCTTGTCAAATTATGAAGTAGACCTGTGTTCCAACTCGGAATCCGTCGAAAATATCAAGTATAATTCTTATGGATATTTACTAGCCCCAGTTTCTAAAATTTACATGAAGTTCAATTCTAAACTCTTATTCGACAATGATTTATTTATGACTAATTAA
- Protein Sequence
- MDQSLHKLQNFGNTCSGLQTSNNLNSRIEIKIEQEDYIEIESEPLHHSIDIKEETTVLEAEVDEQYEGQLSQQFECVCKLKFTDKSQFEKHAKIHSDTKLFEREADDFKDLTKNCSIQHFMSRTRDKRFVCQICDFDCLTKQNLKVHLMNHFGIKPFECEVCNFKCPTKYFLNQHMLTHTRESPFVCEICNFKCSTKYRSKQHLMSHTGSEPFVCDICDFKCSTKHRLKKHFMAHTGEKPFSCEMCDFKCSVKQNLKVHLMTHIGEKPLVCEVCDFQYPTKYLLKKHQMTHVEENPFIHEICDFKCTTTEEKSFAGEVVDLKYSTQQIFTVHLVSHPRGKPFVCEVCDFKCPTEYLLKKHLLSHSRKNPLIREIYDFKCSSIGKNTLADFKYSTKQNLKEELMTDIWEIPFVCEICNLNCSTKYYLEEHLKSHTKDKSFTCALCGFKCSTKHCLKRHLMSHPRKEPLGCEIYDFKKCSTKQNPKEQFKSHSKEKSIVCEICDFKCPSKYLLKQHLMIHEKEKLFMCENCNFQCSTKYRLKRHLITHTGENFFNCKICGFKCLTKVNLKVHLMTHIGETPLVCELCDFKCASKYLLKQHRLTHTRETPFSCKICDFECSTRYRLKQHQFTHTGEKSFTCEICNFDCLTKPRLKQHLMTHTGKKPCACEICDLDCSTKQNLKIHLMTHFGMKPLVCEVCDFKCPTKYLLKQHQITHTGEIPFVCQESPSISLYIVGTVVAALLYLYLHLTRNFKYWKNQNILYVPPKVLFGNIFSICTFQKCMGEFMNDLYNKSTSKMLGFFVFDQPFLFIRDPDLIKQLLVKDFEYFSDRSVVSNGENDQFASKMLFTVKNPMWRHLRIKLTPAFTSGKIKNMTELMTDASKGLIEYIDKKLSQANKFDARNLTMMYTTDVISSCVFGIAANSFKNENAEFRAASKKVFELTLTRAVHSVSSFLAPMLFKIFKMRFLDPSAVEFMQKAFVETLHEREKSKEYRGDLIDILVQIKNNEKSGPEFDENTLVAQAIQFFAAGFESTGSTTFYCLYELSKNKRVQENLRQEIKSVLTGHKQITYDLIQEMSYLDMVIREILRKYPILPFLDRQCTKTYRIPDTDVIVKKGMKVYVSLTGLHYDSNYFPDPEKFIPERFSPENKSNITSNVYMPFGQGLHSCIGERFALMSVKVGITSLLSNYEVDLCSNSESVENIKYNSYGYLLAPVSKIYMKFNSKLLFDNDLFMTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -