Rful014939.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996557.1:14477953-14480384[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.15 4.4 8.8 0.4 2 23 163 185 162 185 0.94 2 13 9.1 2.6e+02 3.2 0.2 3 23 193 210 193 210 0.86 3 13 0.0014 0.041 15.2 2.6 2 23 216 237 215 237 0.96 4 13 0.00011 0.0031 18.7 0.3 1 23 243 265 243 265 0.97 5 13 5.9e-05 0.0017 19.5 1.5 1 23 271 294 271 294 0.97 6 13 0.003 0.087 14.2 4.1 1 23 297 319 297 319 0.98 7 13 1.8e-05 0.00053 21.1 0.5 3 23 413 433 412 433 0.99 8 13 0.05 1.5 10.3 4.6 1 23 439 461 439 461 0.99 9 13 3.7e-05 0.0011 20.2 1.3 1 23 467 489 467 489 0.96 10 13 4.5e-06 0.00013 23.1 4.9 3 23 496 516 495 516 0.98 11 13 0.00026 0.0075 17.5 2.9 1 23 522 544 522 544 0.98 12 13 1.6e-06 4.6e-05 24.5 2.9 1 23 550 572 550 572 0.99 13 13 1.2 34 6.0 4.7 1 23 578 600 578 600 0.98
Sequence Information
- Coding Sequence
- ATGGATAAATCGCCTAATTTTAATATGGAAAATATATGTAGGGCATGTTTTTTATACGTCAGTAACACGAAAACTATGATTTCTACTGATTCAAACTCCAGCAAATGCCTTTTGGATATGTTTGCTGCCCTCCTACATGTTGAGATAGAATCTGTTAAAACTTTATCAACAGTGATTTGTAATTCTTGTGAAACTAGGCTGAAATTGTCTTACAATTTTCAACAACAGTGTCGAGAATCGACTAAAAAATTTGAAGAGTATTTAAAAGTTAAGAAAGAAACGGTAGAACCTGTTAATTTGCTAAACTCCAATGTTGAGTTATCGAATAGTGAGACGAAATGTTTGTCAGAAATTGACAATTCAAAAGAAAATTTTAATATTCCGCAAGAGATATATTTAGCACCGAAAGTACGGTTAGCACAATTTTCTCACAGCGAAGTTGCAAGGGCAATTAAAGAAGTAAGGAAAAACTTTCATAAAAATATTGAATGCTTTGAGTGCGGATTTATTGGAAGTAATTCAAGATCTCTATCAATTCACATATTACATAGACATAAGGAGATAAAAAGCAGATGGTGTGCTGAATGTAATAAAGAATATGATGATCTTGCAGAACACTTGAAAATCCATGAAAATAGTGGCCTTCAGTGTCGTCTTTGTAAAAAGATGTCAAGTACGAAAAGTCACTTGATTGATCATTTAAAAGGCCACTCGGTTACAAAACGATTTAATTGCGAGATTTGTCGCAAATCTTTTATTTCTGCACGCGGCTTAACAGTTCATTTAGAGAAGCACTCAAACGACAAACCATACAAGTGTTCCGTTTGTTCAAAAGCATTTAGTCAAATTAAGCTTCTAAAAAATCATTTGAAGAATCAGCACGAGAGCTTTAAGTGCAATTTTTGTTCTGAAAAGTTTGATAAAAGTCATTTGTTGAAAGTTCATTTAAAGGAGCATTCCAATTTAGATAATTTTTGTGTCGATTGCAATGTTGTAAAAGAAAATGATTGCAAACATATATGTACCAGCAAAGATGAGGCTACAGTAGCAGAGGTGAAGGAAAATCCAGTTGAAAGTATAACTGAAAATGTTTTATTATTTTCTCGCAATTTTTGTACAATTTGTAATAGAAAGGTTAAAAGTTTGTCAAATCACACTGAAAAATTTCATACAACTTTGAAGTCCGATCCAGTCTCAGGCATTCGTATAAATAATGAAAATGAACGAAAGCTTTTGTGCACAATTTGTGGAAAGCAATTTAATGCTGCATATAAATTGAGAATCCACATGAGAACACATACAGGGGATTTACCTTTCCAGTGTTCTTTCTGCAGCAAAAGAATGAATACACACAGCACATTAGTCACACATGAACGGACTCATACTGGAGAAAAGCCACACATTTGTCACGTTTGCGGAAAAGGCTTTTCTCTAGCTAACGCGTTGAATAATCATATGAAGTTACATACTGGACACACTGAAAATTGTTCTATATGTAACAAGCGATTTTGCACACGTTCAGAGCTGAAGGTGCACATGCGAAAACATACAGGTGAAAAACCATATATCTGCACAGAATGTGGACAAGGGTTTGTCCAACATTGTCATTTAGTCGATCATATGGCAACTCACAGTGATATTTGTGCATATAAGTGCACATACTGTGAAAAAACGTTTAAACTAAATTCTACATTGAAGAAGCACATTCAAATACATCTCGGACATAGACGTTTTAAGTGTAGTGAGTGCACTTATTCTAGTTGGTATACTCATAAGCTTACAGAACACATGAAAAAACATCTAGAGGTCAAATCCTGA
- Protein Sequence
- MDKSPNFNMENICRACFLYVSNTKTMISTDSNSSKCLLDMFAALLHVEIESVKTLSTVICNSCETRLKLSYNFQQQCRESTKKFEEYLKVKKETVEPVNLLNSNVELSNSETKCLSEIDNSKENFNIPQEIYLAPKVRLAQFSHSEVARAIKEVRKNFHKNIECFECGFIGSNSRSLSIHILHRHKEIKSRWCAECNKEYDDLAEHLKIHENSGLQCRLCKKMSSTKSHLIDHLKGHSVTKRFNCEICRKSFISARGLTVHLEKHSNDKPYKCSVCSKAFSQIKLLKNHLKNQHESFKCNFCSEKFDKSHLLKVHLKEHSNLDNFCVDCNVVKENDCKHICTSKDEATVAEVKENPVESITENVLLFSRNFCTICNRKVKSLSNHTEKFHTTLKSDPVSGIRINNENERKLLCTICGKQFNAAYKLRIHMRTHTGDLPFQCSFCSKRMNTHSTLVTHERTHTGEKPHICHVCGKGFSLANALNNHMKLHTGHTENCSICNKRFCTRSELKVHMRKHTGEKPYICTECGQGFVQHCHLVDHMATHSDICAYKCTYCEKTFKLNSTLKKHIQIHLGHRRFKCSECTYSSWYTHKLTEHMKKHLEVKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294195;
- 90% Identity
- -
- 80% Identity
- -