Rful008563.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:110902118-110903833[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.023 0.66 11.4 0.7 1 23 86 108 86 108 0.96 2 13 0.00064 0.018 16.3 2.9 1 23 114 136 114 136 0.97 3 13 0.0011 0.033 15.5 0.9 1 23 142 164 142 164 0.98 4 13 0.0002 0.0059 17.8 0.6 1 23 170 192 170 192 0.97 5 13 4.1e-05 0.0012 20.0 2.6 1 23 198 220 198 220 0.98 6 13 0.085 2.4 9.6 3.1 1 23 226 248 226 248 0.97 7 13 0.00096 0.028 15.7 0.1 1 23 254 277 254 277 0.97 8 13 0.0073 0.21 12.9 2.7 1 23 281 305 281 305 0.97 9 13 0.048 1.4 10.4 4.4 1 23 311 333 311 333 0.98 10 13 6.9e-05 0.002 19.3 0.6 1 23 339 361 339 361 0.97 11 13 0.07 2 9.9 2.1 1 23 367 389 367 389 0.94 12 13 0.00012 0.0036 18.5 3.8 1 23 395 417 395 417 0.98 13 13 0.0017 0.048 15.0 3.6 1 23 423 445 423 445 0.98
Sequence Information
- Coding Sequence
- ATGGAAAATGAATTTTTTACAGCTATTGAAAATGTTATAATTAAGCAAGAAATTGAAGAAAATATTGCGGATACGCCTGACATAATATCAGAAGCTGAGTTGACTTCCGAAATAAAACTAGAAAATGTTGACTTGAATTCTTCAGAAGATTTAGAAAGCCACTCGGTGTATATCAAGGAAGAGAAAACGGAGGAGACTGAAGCCCCGAAACCGAAACGAGAAGTACCTATACCTACACTCGATTACAAAAAACCTTACTTGTGTGAGTTTTGTGATTATACAAATATTCGCAAGATCGAACTAAGACGGCACTTAAAAATTCACACCGGAGACAAACCGTTCGCATGCGAATTTTGCGAGTTTAAATGTGAACGGAAGAGCAAGTTGGAACGTCATATAAGAGTTCATACTGGTGAGAAACCATACGCTTGCGAGTTTTGCGATCACACGACCGCCCAAAAAGGTTCACTGCTGCAGCACTTAAAAATCCACACCGGGGAAAAACCGTTTGCGTGTGGAATTTGCGATTATAGAACATCCCAAAAAAGTCGTTTACGCGAACACGCAAGGACCCACACCGGGGAGAGACCTTTTCCATGCGGATTTTGCGATCACAAAGCTACATCTAAAAGCAACCTACAGCGTCACTTAAGAACGCACGCCAACGAAAAGCCGTTTGCGTGCGATTTATGCGATTTTAAAACAAAACAGAGATGTATTTTGCAAAGGCATATACGAAGTCACACGGGGGAGAAACCCTACGAGTGTGAAGTTTGCGGCCTTAAAATTGCAGACAGGATAAGCTTGCGCAGACACATTTTAAGAATGCACACCGGGTCGTTCGAGTGCGAAAATGAAAATTGTGATTTTAAGTGTTCCAATAAACGCGATTTACAGGAACACTTAAAAAACCATCTAATCGAGAAGTTATTTTACTGCGAATATTGTGAATATAATACTCCGAAGGAATGCCACTTGCAACGGCATCTGAGCGTTCATACGGGTGATAAGCCATTTGCGTGCGAAATATGCGACTGTAAATATGCGGACAAGGGCGGTTTACGGCGACACTTGAAGATTCACACCACCGAACAGCCCTTCGAATGCATTCTCTGCGATTACAAGTGTGTAGAAAAAAGTAGGTTACAACGACATCTAAAAATTCACACCACGGAGAGACCATTTTCTTGCGAAATATGTGATTATAGATGTAAAGATAAAAATTCCTTTCAAATACATATGAGAAATCACTCCGGAGAGACGCCTTATGCGTGTGAAATTTGTGAGTTTAAGTGTTCGGACAAACGTCGATTGCGGCGACATATAAAAAGACACGGCAGTTAA
- Protein Sequence
- MENEFFTAIENVIIKQEIEENIADTPDIISEAELTSEIKLENVDLNSSEDLESHSVYIKEEKTEETEAPKPKREVPIPTLDYKKPYLCEFCDYTNIRKIELRRHLKIHTGDKPFACEFCEFKCERKSKLERHIRVHTGEKPYACEFCDHTTAQKGSLLQHLKIHTGEKPFACGICDYRTSQKSRLREHARTHTGERPFPCGFCDHKATSKSNLQRHLRTHANEKPFACDLCDFKTKQRCILQRHIRSHTGEKPYECEVCGLKIADRISLRRHILRMHTGSFECENENCDFKCSNKRDLQEHLKNHLIEKLFYCEYCEYNTPKECHLQRHLSVHTGDKPFACEICDCKYADKGGLRRHLKIHTTEQPFECILCDYKCVEKSRLQRHLKIHTTERPFSCEICDYRCKDKNSFQIHMRNHSGETPYACEICEFKCSDKRRLRRHIKRHGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294183;
- 90% Identity
- iTF_00268941;
- 80% Identity
- -