Rful006283.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:7935708-7936988[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.014 0.4 12.1 5.1 1 23 78 100 78 100 0.96 2 12 0.00011 0.0031 18.7 1.7 3 23 108 128 106 128 0.98 3 12 0.0011 0.031 15.6 1.9 1 23 134 156 134 156 0.97 4 12 0.0011 0.033 15.5 0.5 1 23 162 184 162 184 0.97 5 12 0.0014 0.04 15.2 2.7 1 23 190 212 190 212 0.97 6 12 1.2e-05 0.00035 21.7 1.2 1 23 218 240 218 240 0.98 7 12 6.4e-05 0.0019 19.4 3.2 1 23 246 268 246 268 0.98 8 12 0.0003 0.0086 17.3 2.3 1 23 288 310 288 310 0.98 9 12 0.0017 0.049 14.9 0.9 1 23 316 339 316 339 0.97 10 12 0.029 0.83 11.1 2.4 1 23 345 367 345 367 0.97 11 12 0.0085 0.25 12.7 1.4 3 23 375 395 373 395 0.95 12 12 0.00058 0.017 16.4 0.5 3 23 403 423 401 423 0.97
Sequence Information
- Coding Sequence
- ATGGAATACTCCAAAGAATTACAATCGATTTTGGACTCTTCATGCGACGAAATTAAAACAGAACTGATGGAAGACATGAAAATCAAACTGGAAGATTTGCACGATTTGCACCATTCCATTGACATCAAGGAAGAGGCTTCAATTATTGAAGAACCCCAATTGGATGAAAAATGTATTTTAAATAAACTGCAACTTGCAGAGCATCCAAAAATTGAAACCGACGTCAAAGAATTTTTGTGTACAATTTGCGATTATAAATGCAAAATCAATCAACGCTTCCAACGGCATATGAGGACCCACACCGGAGAAAAGCCGTTTGGATGTGAAATTTGCAACTTTAAAAGTACCAGAAAGGAATCTTTAACAAGGCATTTGAGAACTCACACTGGAGAAAAGCCCTTCGCTTGCGAAATTTGTTACCACAGGTTTTCAGAACGGGAAAAATTAAAAGTTCACGTAAGAAGCCATACCGGAGAAAAACCATTCGCATGTGAACTTTGCGACTTTAGAAGCACTCGAAAAATAGCGTTGAAAAATCATTTGCTCACTCACACCGGCGAAAAGCCATTCGCATGTAAACTTTGCGATTTTAAATGTACTCGAAACGACAAACTAAAAATTCATGTAATTACTCATACTGGCAAAAAACCCTACATTTGTGACATTTGCGAATTTGGTTTTTCCAAAAAAAATTTGTTAAATAAACATCAGAGGACTCATTCCGGAGAAAAACCATTTACATGCGCAATTTGCGACTTTAAATGTTCTCGAAAAGAAAATCTAAAAAGTCACTTGAAAATTCATGTTGAGAAAAAAACAAGTCAGACTTTTCTTCAGGCAGTTACAGACAGACGGAAGAGGTTTGTGTGTGAAATTTGCGGATATCAGTGTAGGAATAAGGCAACTATGAGATATCACGTAAGAACTCATACCGGGGAAAAACCGTATCAATGTGAATTTTGCGAAATGAAATTTATACTGAACGGAAAATTAAAGAAGCACGTAATGATGACGCATACGGGGGAAAAACCGTTTTTTTGTGAAACGTGTGACTTTAAAAGTGCGTTTAGTGAACGTTTGAGAAGACATTTAAAAACGCATTCCGGGGAAAAACCGTATGGTTGTGAAATTTGCGAATATAAATCGTTGGACAGGTATCATCTAAAAGTGCACATGAGAACTCATACAGGTGAAAAACCGTATGGGTGTGAACTTTGTAACTTTGCTTATTCGAGTAAGCAAGGTTTGAAACGTCACTTAAAAATTCATAGTAACAGTTAA
- Protein Sequence
- MEYSKELQSILDSSCDEIKTELMEDMKIKLEDLHDLHHSIDIKEEASIIEEPQLDEKCILNKLQLAEHPKIETDVKEFLCTICDYKCKINQRFQRHMRTHTGEKPFGCEICNFKSTRKESLTRHLRTHTGEKPFACEICYHRFSEREKLKVHVRSHTGEKPFACELCDFRSTRKIALKNHLLTHTGEKPFACKLCDFKCTRNDKLKIHVITHTGKKPYICDICEFGFSKKNLLNKHQRTHSGEKPFTCAICDFKCSRKENLKSHLKIHVEKKTSQTFLQAVTDRRKRFVCEICGYQCRNKATMRYHVRTHTGEKPYQCEFCEMKFILNGKLKKHVMMTHTGEKPFFCETCDFKSAFSERLRRHLKTHSGEKPYGCEICEYKSLDRYHLKVHMRTHTGEKPYGCELCNFAYSSKQGLKRHLKIHSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294169;
- 90% Identity
- iTF_01294169;
- 80% Identity
- -