Rful009744.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:6669969-6671285[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.048 1.4 10.4 4.5 1 23 67 89 67 89 0.98 2 13 0.00016 0.0046 18.2 3.6 1 23 95 117 95 117 0.97 3 13 0.00026 0.0075 17.5 0.8 1 23 123 145 123 145 0.97 4 13 0.016 0.46 11.9 2.5 1 23 151 173 151 173 0.97 5 13 0.00046 0.013 16.7 0.4 1 23 179 201 179 201 0.97 6 13 0.0012 0.035 15.4 0.3 1 23 207 229 207 229 0.97 7 13 0.0061 0.18 13.2 1.2 1 23 235 257 235 257 0.97 8 13 0.0015 0.045 15.1 3.7 3 23 265 285 263 285 0.98 9 13 0.0012 0.034 15.4 0.2 1 23 291 313 291 313 0.97 10 13 0.00057 0.017 16.4 1.7 1 23 319 341 319 341 0.98 11 13 0.00077 0.022 16.0 1.8 1 23 347 369 347 369 0.97 12 13 0.0003 0.0086 17.3 1.4 1 23 375 397 375 397 0.98 13 13 0.0047 0.14 13.6 5.1 1 23 403 426 403 426 0.95
Sequence Information
- Coding Sequence
- ATGGAAAACAGTGGCAATATTTTAGAAACTCCATATAATTTAAGTTGTAAAGTGGAAGTTAAAACGGAGGAATCTGAAGACATAAAATTTAATTTAGAAGAATTGCATCATTCAATAGATATTAAGGAGGATGAAAGCGATGGAGCAGCACTAATAAAGGAAAAACCTGCTAAAAATATTGGTAATCGAGTGAAATTGTTTCATTGTGAAGTTTGTGGTTATGAATGTGCACATAAATCAAGATATCTGGTACATTTAATAACTCACACTGGCAAAAAACCGTTCGATTGCGAGTTTTGTGACTACAAATGTGCTCAAAAATCGACTTTAAAAGAACATTTAAGAACTCACACGGGCGAGAAACCTTTTGCGTGTGACATTTGTGGACATAAATCTGCACGTAAACGGGACTTATTAGTACATTTAAAGACTCACACAGGCGACAAACCATTTGCTTGTCAGCTTTGTGAATATAAAGGTGCACGCAAACATAAGTTAAAAGATCATTTAAAAACTCACACAGGGGAAAAACCGTTTGCTTGTGACATTTGTGAATATACATCTGCACGCAAACAAGACTTAAAAAATCATTTAAAACTTCACACAGGCAAGAATCTTTTTGCTTGTGAGATTTGTGAATATAAATCTCCACGCAGACGTGAATTAAAACAACATTTAAATATTCATACAGGCGAGAAACCTTTTGCATGTGGGATGTGTGACTATAGATCTATTAAAAATTCAACTTTAAAAGAACATTTTAAAACTCATACAGGCGAGAAACCCTTCGGTTGCGAGATTTGTGGACATAAATGTGCACGCAGACGAGACTTACGAGAACATTTAAAAACTCACACAGGGGAAAAACCGTTTGCGTGTGACATTTGTGAATATACAGCTGCACGCAAACAAGACTTAAAAAATCATTTAAAACTTCACACAGGCGAGAATCTTTTTACTTGTGAGATTTGTGAATATAAATCTCCACGCAGACATGAATTAAAACAACATTTAAATATTCATACAGGCGAGAAACCTTTTGCATGTTGGATTTGTAAATATAAATTTGCACGCAGAAAAGATTTAAGATATCATTTTAAAATTCACACAGGCGAGAAATCCTTTGTTTGTGCAATTTGTAAATATAAATGTGCACGCAAACGAGGCTTAATAATACATTTAAGAACTCACACAGGCGAAAAACCGTTTACTTGTGAGGTTTGTGACTTTAAATTTTCACATAAACAAAGTTTAAATTATCATTTTAAAAATTCACATTTAAAATTTCCTGCAGGACTTAAATCTGAAAAGGAATAA
- Protein Sequence
- MENSGNILETPYNLSCKVEVKTEESEDIKFNLEELHHSIDIKEDESDGAALIKEKPAKNIGNRVKLFHCEVCGYECAHKSRYLVHLITHTGKKPFDCEFCDYKCAQKSTLKEHLRTHTGEKPFACDICGHKSARKRDLLVHLKTHTGDKPFACQLCEYKGARKHKLKDHLKTHTGEKPFACDICEYTSARKQDLKNHLKLHTGKNLFACEICEYKSPRRRELKQHLNIHTGEKPFACGMCDYRSIKNSTLKEHFKTHTGEKPFGCEICGHKCARRRDLREHLKTHTGEKPFACDICEYTAARKQDLKNHLKLHTGENLFTCEICEYKSPRRHELKQHLNIHTGEKPFACWICKYKFARRKDLRYHFKIHTGEKSFVCAICKYKCARKRGLIIHLRTHTGEKPFTCEVCDFKFSHKQSLNYHFKNSHLKFPAGLKSEKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292560;
- 90% Identity
- iTF_01292560;
- 80% Identity
- -