Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:22199057-22201009[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0048 0.14 13.5 4.2 1 23 266 288 266 288 0.98

2 10 0.0025 0.073 14.4 1.8 1 23 294 316 294 316 0.97

3 10 0.0001 0.003 18.8 0.7 1 23 322 344 322 344 0.97

4 10 1.7e-05 0.00049 21.3 0.7 1 23 350 372 350 372 0.97

5 10 0.014 0.4 12.1 3.6 1 23 378 400 378 400 0.98

6 10 0.00051 0.015 16.6 3.5 1 23 406 428 406 428 0.97

7 10 8.3e-06 0.00024 22.2 0.3 1 23 434 456 434 456 0.97

8 10 5e-05 0.0014 19.8 0.8 1 23 462 484 462 484 0.97

9 10 1.2e-05 0.00033 21.8 1.3 2 23 491 512 490 512 0.97

10 10 3.3e-05 0.00096 20.3 2.0 1 23 518 540 518 540 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0048	0.14	13.5	4.2	1	23	266	288	266	288	0.98
2	10	0.0025	0.073	14.4	1.8	1	23	294	316	294	316	0.97
3	10	0.0001	0.003	18.8	0.7	1	23	322	344	322	344	0.97
4	10	1.7e-05	0.00049	21.3	0.7	1	23	350	372	350	372	0.97
5	10	0.014	0.4	12.1	3.6	1	23	378	400	378	400	0.98
6	10	0.00051	0.015	16.6	3.5	1	23	406	428	406	428	0.97
7	10	8.3e-06	0.00024	22.2	0.3	1	23	434	456	434	456	0.97
8	10	5e-05	0.0014	19.8	0.8	1	23	462	484	462	484	0.97
9	10	1.2e-05	0.00033	21.8	1.3	2	23	491	512	490	512	0.97
10	10	3.3e-05	0.00096	20.3	2.0	1	23	518	540	518	540	0.97

Sequence Information

Coding Sequence: ATGAGACCCGTCCAGTTCTTATTCGTCGGACAGGCCATTCCGACGGGTGACCAGACCAGAGTGTTGGGCATCGACATCGATAAGTATTTGTCCTTCAAACCTCACATCTTACGAGTCACCAAGAGGGCGACAACGTCGACAGAGGCCCCACACAAGATTATGCCCAATGTAAGAAGCCCAAGCGAGGCTAAAAGGAGGCTCATGAGCACTATATCGGACTCCATCATGCTGTGCGCAGCTCCTATATGGGTGTCTTTCCTGGAGAAGATAAGTTATAGAAAAATAATGAAAAAAGTCCAAAGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTTCTGCCCACACATCTAAAGGCACAGATGCAAGACGCAAAATATCGATCAACATCTACGACAGCTTACAACGAAAGAGTCAGCGCACTGGAGACTGTCAGTCAGAGCACTGCAACAGAATTCAGTCGCACCAATCCAAATTATAGAGAGTTTGAAATTATGGAATCGATCGACCAAGTACCGCAACCTCCATATAATTCTGATAGCTGTAAAGTTAAAGAAGAAGACCTAGAAATTATGGAACCGATCGACCAAGTACCGCAACCTCCATATAATTCTGATAGCTGTAAAATTGAAGTAGAAGACCTAGAAGATGTGAAGTTTAATTTGGAAGATTTACATCATTCGATAGATATCAAAGACGAGAGCGATGCAGAACAATTACCATTGGAGAAACCTGTAAGAAAAACTAAAAACTCAAATTTTAGTTGTCAGTTTTGTGACTTTAAAAGTGCACATAAGTCAAGTTTAAAACAGCATTTAAAAATTCATACAGGCGAGAAACCTTTTGCTTGTGAGATTTGCGAATACAAAGGTGCAAACAAACACCATTTAATTGATCATTTAAAAACTCACACAGGCGAAAAACCTTTTGCTTGTGAGATTTGTGACTATAAAAGTGCTCGAAAATCGCAATTAAAATATCATTTAAAAATTCACACAGGCGAGAAACATTTTGCTTGTGAGATTTGTAGTTATAAATTTGCTCAGAAATCATCTTTAAAATTACATTTAAAAATTCACACAGGCGAGAAACCTTTTTCTTGCGAGATTTGTGAATTCAAAAGTGCATACAAATCGCATTTTAAAGATCATTTAAAAAGTCACACAGGCGAGAAACCTTTTGCTTGTCAGATTTGTGACTATAAATGTGTTCGAAAATCATATTTAAATTATCATTTAAAAAGTCATACAGTAAAAAAATCTTTTGCTTGTGAGATATGTGACTATACGAGTGCTTACAAATCAAACTTAAAAGTCCATATAAGAAGTCACACAGGCGAGAAACCTTTTGATTGCGAGATTTGCGACTACACAAGTGCAAACAAACGCCAATTAAATAATCATTTAAAAACTCACACATTAAATAAACCTTTGAGTTGTGTGATTTGTGACTATACATGTGCTTACAAATCAAACTTAAAAGTTCATATAAGAACTCACACAGGGGAGAAACCTTTTGCTTGTGAGATTTGCGACTACACAAGTGCAAACAAACACCAATTAAATAAACATTTAAAAACTCACAGCAGATAA
Protein Sequence: MRPVQFLFVGQAIPTGDQTRVLGIDIDKYLSFKPHILRVTKRATTSTEAPHKIMPNVRSPSEAKRRLMSTISDSIMLCAAPIWVSFLEKISYRKIMKKVQRKXXXXXXXXXXXXXXXXXXXXXSLLPTHLKAQMQDAKYRSTSTTAYNERVSALETVSQSTATEFSRTNPNYREFEIMESIDQVPQPPYNSDSCKVKEEDLEIMEPIDQVPQPPYNSDSCKIEVEDLEDVKFNLEDLHHSIDIKDESDAEQLPLEKPVRKTKNSNFSCQFCDFKSAHKSSLKQHLKIHTGEKPFACEICEYKGANKHHLIDHLKTHTGEKPFACEICDYKSARKSQLKYHLKIHTGEKHFACEICSYKFAQKSSLKLHLKIHTGEKPFSCEICEFKSAYKSHFKDHLKSHTGEKPFACQICDYKCVRKSYLNYHLKSHTVKKSFACEICDYTSAYKSNLKVHIRSHTGEKPFDCEICDYTSANKRQLNNHLKTHTLNKPLSCVICDYTCAYKSNLKVHIRTHTGEKPFACEICDYTSANKHQLNKHLKTHSR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -