Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:111177431-111187698[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00063 0.018 16.3 0.5 3 23 237 257 235 257 0.98

2 11 7.1e-06 0.0002 22.4 2.5 1 23 264 286 264 286 0.98

3 11 0.00092 0.026 15.8 2.6 1 23 292 314 292 314 0.94

4 11 1.4e-05 0.00042 21.5 3.7 1 23 321 343 321 343 0.98

5 11 2.4e-06 7e-05 23.9 3.6 1 23 349 371 349 371 0.98

6 11 0.006 0.17 13.2 5.4 1 23 402 424 402 424 0.97

7 11 0.0016 0.047 15.0 2.2 1 23 430 452 430 452 0.98

8 11 0.027 0.77 11.2 0.1 1 23 458 481 458 481 0.96

9 11 0.012 0.34 12.3 0.4 1 23 487 509 487 509 0.99

10 11 7.1e-06 0.00021 22.4 1.4 1 23 515 537 515 537 0.98

11 11 0.0099 0.29 12.5 0.5 1 23 543 565 543 565 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00063	0.018	16.3	0.5	3	23	237	257	235	257	0.98
2	11	7.1e-06	0.0002	22.4	2.5	1	23	264	286	264	286	0.98
3	11	0.00092	0.026	15.8	2.6	1	23	292	314	292	314	0.94
4	11	1.4e-05	0.00042	21.5	3.7	1	23	321	343	321	343	0.98
5	11	2.4e-06	7e-05	23.9	3.6	1	23	349	371	349	371	0.98
6	11	0.006	0.17	13.2	5.4	1	23	402	424	402	424	0.97
7	11	0.0016	0.047	15.0	2.2	1	23	430	452	430	452	0.98
8	11	0.027	0.77	11.2	0.1	1	23	458	481	458	481	0.96
9	11	0.012	0.34	12.3	0.4	1	23	487	509	487	509	0.99
10	11	7.1e-06	0.00021	22.4	1.4	1	23	515	537	515	537	0.98
11	11	0.0099	0.29	12.5	0.5	1	23	543	565	543	565	0.99

Sequence Information

Coding Sequence: ATGTTAGATTTTGAAATAACAACTTCGTTTGACGAAATCTTACAAAATGTCAAAGAAACACTAAGGAATTATTTTATCGAGAACCATATAAAAAATGTGGATCAGGTCTCGAAAGTTATATCAGTTATGATCGACAATTTAAAAATTTTAGTTTCGTCTGGTGAATCTACACAAACGACAATGGAACAATTAGAAAGAGTGTTGAAAAAACATTATAAACAGAAAACAGTGCTAATTGCCGAAAGATATAACTTTTTTAAAAGAGATCAAGTTCATAACGAATCTATTACAAGTTACGTAGATGAATTGAAAAAGTTAGCAACGACTTGCTTATTTGGAGTATTTTTAGAGGAAGCTTTGCGTGATAGGTTGGTTTGTGGAATTAAAGATGAAAGTATTCAAGCAGATCTGTTATCAAAAAAGGAATTGACGTTTGATTATGCGTATCAGTATGCCTCGACGATGGAGAAACTGGCGGTAGAAAGCAAGCAGGCAGAAAAAGTCGATCGTAATAAGAACAAGAAGAAAGTTAAAAATAAAAAGAAGACAGTAGAGTTGGATGTGGGCACTGCAGAGGAATTACATCATTCGATTGATATTAAAGAAGAACTACAACCTTTCGAATTTGAAGCATCGGAAGAAATTGACGCCTTAAAAGGCGAACTCAGCGATAATTTACCACTTGAATCAGTAAATCAACTTTTTGGATGTGATAAGTGTGAAGAACAGTTTACCGAAAAAGCGAGTTTACAAAAGCATTTGATGTCTCACACCAAACAAACTAAGCAGCATACATGCAGATTTTGTGGTAAAACTTTTCCAAGGAGTGATACTTTAGTAAGGCATTTGAAAGTTCATAAAGATTTGAAACCGTTTTTGTGCGAAACGTGTAATGAGTGTTTTTCAAGCAACGACAGCTTGCGACTACACAAGCAAGGTCACGTAACTGTCGAGGTATCCCACACATGTCAAGAATGTGGTAAAGAATTTCCTAAAAGGTCAAAATTGTACAGACATTTAAAAACTCATGGCGAAAAACAAAAATTTGAATGTGAATTTTGTGACCGGTTCTTTACAAGGAAAAGTAATTTGAAGCTGCACTTAAAAAAACACGCAGGAAAAGAAGAAGTTTTGGGCCGTCCAATTTCCAGCAACATTTTGGGAGGAGAAAATAATGACGAAAGCAAGTTGGATGCTGCACTCTTTATATGCCACGTTTGCAAATTCACAACTGAAAAGAAACATAATTTACGACGGCACGTGAATGTCCACATTGGATACAAACCGTTTATGTGTGACGTTTGTGATTATAGAACTACTAGCAACAGATACTTGCAAGATCACTTTAGGAGACATACGGGCATAAAGCCATTTGCATGTGAAGTTTGTGATTATAAATCAGCAACTAAAAGTGCAGTAAAGTACCACGTTGAAACTGTTCACGGCGGCGAGAAAAAATATGTTTGTGAATTTTGTGCTTATAAAACTAACAATAGTGCCGTGTTGCGCATACATTTAAGGACCCATACAGGCGAAAAGCCCTTCGAGTGCAAAATTTGTAATTACAAAACCTCTGATCGAAGCACACTGCGAAATCACATACGAATCCATACAGGAGAAAAACCGTATTCTTGTAAGCTTTGTGATTATAGAGCAGCACAAAGAACTGGGTTAGTTTACCATTTAAAAACTCATCAGAAAAAAAAGAAGGTTGCACAACCAGAAAATTCACTTTTATAA
Protein Sequence: MLDFEITTSFDEILQNVKETLRNYFIENHIKNVDQVSKVISVMIDNLKILVSSGESTQTTMEQLERVLKKHYKQKTVLIAERYNFFKRDQVHNESITSYVDELKKLATTCLFGVFLEEALRDRLVCGIKDESIQADLLSKKELTFDYAYQYASTMEKLAVESKQAEKVDRNKNKKKVKNKKKTVELDVGTAEELHHSIDIKEELQPFEFEASEEIDALKGELSDNLPLESVNQLFGCDKCEEQFTEKASLQKHLMSHTKQTKQHTCRFCGKTFPRSDTLVRHLKVHKDLKPFLCETCNECFSSNDSLRLHKQGHVTVEVSHTCQECGKEFPKRSKLYRHLKTHGEKQKFECEFCDRFFTRKSNLKLHLKKHAGKEEVLGRPISSNILGGENNDESKLDAALFICHVCKFTTEKKHNLRRHVNVHIGYKPFMCDVCDYRTTSNRYLQDHFRRHTGIKPFACEVCDYKSATKSAVKYHVETVHGGEKKYVCEFCAYKTNNSAVLRIHLRTHTGEKPFECKICNYKTSDRSTLRNHIRIHTGEKPYSCKLCDYRAAQRTGLVYHLKTHQKKKKVAQPENSLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -