Rful010640.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:11508528-11510005[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.7e-06 0.00014 23.0 0.9 1 23 83 105 83 105 0.98 2 12 7.8e-05 0.0023 19.1 2.9 1 23 111 133 111 133 0.98 3 12 0.0029 0.084 14.2 3.9 1 23 139 161 139 161 0.98 4 12 0.0001 0.003 18.8 2.7 1 23 167 189 167 189 0.99 5 12 8.2e-05 0.0024 19.1 3.9 1 23 195 217 195 217 0.98 6 12 0.0012 0.035 15.4 2.3 1 23 223 245 223 245 0.98 7 12 0.0046 0.13 13.6 3.9 1 23 251 273 251 273 0.98 8 12 0.00026 0.0074 17.5 1.2 1 23 279 301 279 301 0.98 9 12 0.00059 0.017 16.4 2.9 1 23 307 329 307 329 0.98 10 12 3.3e-05 0.00094 20.3 3.2 1 23 335 357 335 357 0.98 11 12 0.0032 0.091 14.1 1.4 3 23 365 385 363 385 0.97 12 12 0.054 1.6 10.2 2.2 3 22 393 412 391 416 0.93
Sequence Information
- Coding Sequence
- ATGGAAGCGGATCGTAATGCAGATATGACTGAAGTGTTACCTTCGGAAGAGTTGCTAATTATGGAAAGCAATGGTAATTACAAACTTAAAACAGACTTGGATGACGTGAAATTGAATTCAGAAGACTTACATCATTCCATCGATATCAAAGAAGAAAGTGGTGAGATTGAGAAAAATTTATTTGAGTGTGCAGTTTGGAAGTTTGAGGATAGAAATTTATTAAAGCAGAATTTAATTAAGAAATCATTTAGTTGTGAAGTTTGTGGTTTGAAATATACAAGAAAGTCAAGTTTAAAAATGCATTTAATAACTCACACCGACCAAAAACCGTTTAGTTGTGACGTTTGTGATTATAAATGTGCATACAAGTCAAGTTTAAAAGTGCATTTGAAAACCCACTCTGGTGAGAAACCATTTAATTGTGAAATGTGTGTTTTTACCTGTTCAAGCAAGTGGAGTTTAAAGAGGCATTTAAAAAGCCACATCGGCGAGAAACCGTTTACTTGCGAAAGCTGCGGCTATAAATGTGTACAAAAATCGGATTTAGATAAACATGTAAGAACTCACACTGGTGAAAAACCATTTAATTGCGAAATCTGTGATTATAAATGTGCCCAACAATCGGATTTAAAAAAACATTTCAAAACTCATACGGGTGAAAAACCGTTTGTATGTGAAATTTGCAACTATAAATGCCTACAAAAAAGTTACCTTGAAATCCATTTAAGAACTCACACCGGCGAGAAACCGTTTAGTTGTGAACTGTGCAACTATAAATGTGCACGAACAAGTCGGTTAAAAATACATTTAAAAACTCACACCGGCGAGAAGCCGTATAGTTGCGAAATTTGCGCGTATAAGACCGCAACAAAGTCAAATTTAAAAATCCATTTTAAAACTCACACCACCGAAAAACCGTTCACGTGTGAAGTTTGCAACTATAAATGTGCGTACAAGTCGAGTTTAAAAATGCACGTAAAAATTCACTCCGGTGAAAAACTGTTCGCTTGTGACATTTGTGTGTATAAATGTACCCAAAAATCGGATTTAAAAAAGCATTTACGCACTCACACGGGCGAAAAACCGTTTGGTTGTGTAATTTGTGACTACAAATGCGCTCAAAGTTCGGATTTAAAAAGTCATTTTAAAATTCATACCGGTGAAAAACCGTTCGGCTGTGGATCTTGTGGCTTTAAAACCGCACATAAGTCAAGTTTAAAAACGCATTTAAAAACTTACACCACGCACACGACACATCGCACTGTTTAG
- Protein Sequence
- MEADRNADMTEVLPSEELLIMESNGNYKLKTDLDDVKLNSEDLHHSIDIKEESGEIEKNLFECAVWKFEDRNLLKQNLIKKSFSCEVCGLKYTRKSSLKMHLITHTDQKPFSCDVCDYKCAYKSSLKVHLKTHSGEKPFNCEMCVFTCSSKWSLKRHLKSHIGEKPFTCESCGYKCVQKSDLDKHVRTHTGEKPFNCEICDYKCAQQSDLKKHFKTHTGEKPFVCEICNYKCLQKSYLEIHLRTHTGEKPFSCELCNYKCARTSRLKIHLKTHTGEKPYSCEICAYKTATKSNLKIHFKTHTTEKPFTCEVCNYKCAYKSSLKMHVKIHSGEKLFACDICVYKCTQKSDLKKHLRTHTGEKPFGCVICDYKCAQSSDLKSHFKIHTGEKPFGCGSCGFKTAHKSSLKTHLKTYTTHTTHRTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -