Rful010642.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:108903423-108904823[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00059 0.017 16.4 2.9 1 23 102 123 102 123 0.98 2 13 0.022 0.63 11.4 5.3 1 23 129 151 129 151 0.98 3 13 4.8e-05 0.0014 19.8 2.0 1 23 157 179 157 179 0.97 4 13 0.001 0.029 15.6 2.9 1 23 185 207 185 207 0.98 5 13 0.00018 0.0051 18.0 1.9 1 23 213 235 213 235 0.98 6 13 2.2e-05 0.00065 20.9 1.2 1 23 241 263 241 263 0.96 7 13 0.0018 0.053 14.8 6.7 1 23 269 291 269 291 0.97 8 13 0.0017 0.05 14.9 4.4 1 23 297 319 297 319 0.96 9 13 6.3e-05 0.0018 19.4 5.1 1 23 325 347 325 347 0.98 10 13 0.0019 0.056 14.8 3.3 1 23 353 375 353 375 0.97 11 13 0.00076 0.022 16.0 0.4 1 23 381 403 381 403 0.98 12 13 0.029 0.84 11.1 2.0 1 23 409 431 409 431 0.97 13 13 0.00089 0.026 15.8 4.0 1 23 437 459 437 459 0.97
Sequence Information
- Coding Sequence
- ATGCTTGGGGTGGAAATGGAAGATGAAAACAATATCGGAATTGCCAGGTTCCTTCCAAGTTTTTCCAACGATATAGAAACTGAAACAAATCATAACCTCAATTCTGATGTCGAAATGGACGTAAAAAGTATTAAATTAGAAAATCTACCTGTTTTCGTTAATATTAAAGAAGAAGTCGACGAATGCAATGTTTTTTTACATGAAGTAAACATTAAAGAAGAAGATTTTATGACAACAGGTGAAGATCAGATTCGAGAAGAATTGGAAACACCAGAAGTAATTCCATATTTGAATAAAAAATCCTATAAGTGTGATATTTGTAACAAGAACTATTCGCGTAGGTATTTAAAAGAGCACTTAAAAACGCATACAGGTGAGAAGCCACATAAGTGTAATGTTTGTGATTTGAAGTTCCTCCATAAATCATCCCTAAGTGAACATTCCAGAACTCACACCGGTGAGAAACCATTTTCCTGCACAATGTGCGATTTAAAGTTTTCGAGCAGTTCGGGCTTAACGAAACATAAAATGTATCATACTGGAGAAAGACTGCACGTTTGTGAAATTTGTAACAAGGAATTTTTCCTAAAATCAGCCATGAGGAACCATTTTAGAACTCACACTGGAGAAAAGCCTTATCCATGCAAATTTTGTGATGCGTGGTTCTCGCACACTTCAAATTTAACAAGACATTTAAGAATCCACACAGGAGAAAAGCCGTACTCTTGTACGATATGTGACCTAAAATTTTCGAGCAATTCGGGTTTAACAAAGCATAAAATTTACCACACCGGAGAAAAACTGCATTCGTGTGAAATTTGCCACAAGAAATTTTTTCAAAAATCGGCCATGATGAGCCACTTCAGAACTCATACAGGTGAAAAACCGTATTTGTGCAAATTTTGTAATTCCTATTTTTCACATTCCTCAACCTTAACGAAACACGTCAGAATCCACACCGGAGAAAAACCATTTAAGTGTGAAGTTTGTCATAAAAAGTTTTCACAAAAAGTGCATCTCAACGAACATTCCAACGTTCACACGGGCGAAAAACCATATTCCTGCAATATTTGCAGCTCGAAGTTTTCTTACAGATCAGCCTACACAAAGCATCTGAAATTTCATGCAAGAAAGATTCAGTACGAGTGTAAAATTTGTGACAAGAAATTTTTGGATAAAGAAGTTTTCCAAGCTCATTTACAAGTACATACTGGTGAGAGCTTGTACATATGTAATACTTGCTGCAAAATGTTTGTAAAAAAATCGCGCTTAGTGGCGCACTTAATAAGCCACACAGGAAAAAAGCCATACTCGTGTGAAATTTGCAACTCGAAATTTTCGTATAAATCGACCTACACGAAACATTTGAAATTTCACAAGGTGAAGACTGATGAAGTGTGA
- Protein Sequence
- MLGVEMEDENNIGIARFLPSFSNDIETETNHNLNSDVEMDVKSIKLENLPVFVNIKEEVDECNVFLHEVNIKEEDFMTTGEDQIREELETPEVIPYLNKKSYKCDICNKNYSRRYLKEHLKTHTGEKPHKCNVCDLKFLHKSSLSEHSRTHTGEKPFSCTMCDLKFSSSSGLTKHKMYHTGERLHVCEICNKEFFLKSAMRNHFRTHTGEKPYPCKFCDAWFSHTSNLTRHLRIHTGEKPYSCTICDLKFSSNSGLTKHKIYHTGEKLHSCEICHKKFFQKSAMMSHFRTHTGEKPYLCKFCNSYFSHSSTLTKHVRIHTGEKPFKCEVCHKKFSQKVHLNEHSNVHTGEKPYSCNICSSKFSYRSAYTKHLKFHARKIQYECKICDKKFLDKEVFQAHLQVHTGESLYICNTCCKMFVKKSRLVAHLISHTGKKPYSCEICNSKFSYKSTYTKHLKFHKVKTDEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271630;
- 90% Identity
- -
- 80% Identity
- -