Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:3282848-3285245[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.027 0.78 11.2 0.7 1 20 121 140 121 142 0.94

2 15 0.018 0.52 11.7 2.0 1 23 145 167 145 167 0.98

3 15 0.0022 0.064 14.6 2.2 1 23 173 195 173 195 0.96

4 15 0.88 25 6.4 1.3 1 23 201 223 201 223 0.94

5 15 0.00047 0.013 16.7 1.0 1 23 229 251 229 251 0.99

6 15 2.6e-05 0.00076 20.6 2.2 1 23 257 279 257 279 0.99

7 15 0.13 3.7 9.0 1.4 1 23 285 307 285 307 0.97

8 15 0.00055 0.016 16.5 2.8 1 23 313 335 313 335 0.98

9 15 0.016 0.47 11.9 4.4 1 23 348 370 348 370 0.99

10 15 0.00022 0.0063 17.8 0.6 1 23 376 398 376 398 0.98

11 15 0.0003 0.0086 17.3 6.9 1 23 404 426 404 426 0.98

12 15 0.0016 0.045 15.1 1.9 1 23 432 454 432 454 0.98

13 15 0.00011 0.0031 18.7 5.0 1 23 460 482 460 482 0.99

14 15 0.0055 0.16 13.3 3.8 1 23 482 504 482 504 0.98

15 15 6.3e-05 0.0018 19.4 1.4 1 23 510 532 510 532 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.027	0.78	11.2	0.7	1	20	121	140	121	142	0.94
2	15	0.018	0.52	11.7	2.0	1	23	145	167	145	167	0.98
3	15	0.0022	0.064	14.6	2.2	1	23	173	195	173	195	0.96
4	15	0.88	25	6.4	1.3	1	23	201	223	201	223	0.94
5	15	0.00047	0.013	16.7	1.0	1	23	229	251	229	251	0.99
6	15	2.6e-05	0.00076	20.6	2.2	1	23	257	279	257	279	0.99
7	15	0.13	3.7	9.0	1.4	1	23	285	307	285	307	0.97
8	15	0.00055	0.016	16.5	2.8	1	23	313	335	313	335	0.98
9	15	0.016	0.47	11.9	4.4	1	23	348	370	348	370	0.99
10	15	0.00022	0.0063	17.8	0.6	1	23	376	398	376	398	0.98
11	15	0.0003	0.0086	17.3	6.9	1	23	404	426	404	426	0.98
12	15	0.0016	0.045	15.1	1.9	1	23	432	454	432	454	0.98
13	15	0.00011	0.0031	18.7	5.0	1	23	460	482	460	482	0.99
14	15	0.0055	0.16	13.3	3.8	1	23	482	504	482	504	0.98
15	15	6.3e-05	0.0018	19.4	1.4	1	23	510	532	510	532	0.97

Sequence Information

Coding Sequence: ATGGAAGGTTTGCACCACTCCGTTGATATTAAGGACGAACCGAATTTCGACTATCGACTGGATACTAACGAGGAATCTTCTCGCCATTCAAATAACTACTTGAAAATTAAGACGGAAGAAGAATGGAAATTGCAGTTAGAAGAGTTGCATCATTCCATCGACATAAAAGAAGATGCTTCAATTCAAGATTGTCAGCCAGATAGAAAAATCTATACAGGTGAAACTTTAGATAGCCACTTGCAAATTAAAACAGAAGAAGAGGAATTGAAGTTAGAAGATTTTGATCAACGTAGGAAAATAAAATCAACCGGTGAACCGCTTTCGCGTAAAATTTCTGAACGTAATTCGGGTAAGAAACAATTCATGTGTGAATATTGTGACTACAAATCTACAAAAGAGCAACATTTAAAAATTCATACAGCCGAGAAACCGTTCAAGTGTGGAATTTGTGACTATAAATCTGCAAGAAAACCAGATTTAAAATGCCATTTAAACACCCACACAGGCGATAAAAAATATTTGTGTGCAATTTGTGACTTCAAATCTGGGCATAGGGAAAATTTAAAGCGGCATTTGAAAACTCACACAGGCCAAAAACCGTTTTTGTGTGAATTTTGTGACTTTAAATCTGCATATAAATTGAGCTTAAAGTACCACTTAAAAGCCCATACGGGCGAGAAATTGTTTACGTGTGAGATTTGTGACCACAAATCTATAAATGAAGGAAGTTTAAAAGTTCATTTAAAAACTCATTCAGGCAGGAAATCGTTTAGGTGTGTTATTTGTAATTACACGTATGCACATAAGGCAGATTTAAACAATCACTTAAGAAAACATACGGGTGAGAAACCGTTCCAGTGTGCAATTTGTGACTACAAAACTGCCCAAAAGAGATTTTTAAAGTTTCACTTAGAAACTCACATGGGCGAGAAACCGTTCATTTGTGAGATTTGTGGTGTCCTATACATACACAAGCACAGTTTAAAAAATCACTTAAAAACGCACACGCGCGAGAAACCAAGTCATACGAGCGAAAAACCATTTAAGTGTGTTTTATGTGATTTCAAAACTGCACATAAAAACAGCTTAAAATATCATTTAAAAACTCACACCGGCGAGAAACCATTTTCGTGTGGGATTTGTGACGTCAAATTAGCACGCAAGGCTAATTTAGTGCATCATTTAAAAACTCACACGGGTGAGAAACCATTTCATTGTGAACTTTGCGATTATAAATGTACGCGAAGAAGCAATTTAAAAGATCATCTAAAAACTCATACGGGCGAGAGGCAGTTCACTTGTTCAATTTGTGACTACAAATTTGCACATAAAGGAATTTTAAAAGGTCACTTAAAAACGCATACAAACGACAAACCGTTTAAATGTGAAATTTGCGGTTATAAATGTGCAAAAAGGCACAATTTAAAACTTCATCTAAAAACTCACACATGTGAAATTTGTGACCAAAAATGTGCAAATAGGCAAACATTAAAAGTTCATTCAATGACTCATTCGGGCGAGGAACTGTTCGCATGTTCAATTTGTGATTATAAAAGTATACGGAGCCAATATTTAAAAAGGCATTTAAGGACTCATGCAATAATCAAAATAAAATAA
Protein Sequence: MEGLHHSVDIKDEPNFDYRLDTNEESSRHSNNYLKIKTEEEWKLQLEELHHSIDIKEDASIQDCQPDRKIYTGETLDSHLQIKTEEEELKLEDFDQRRKIKSTGEPLSRKISERNSGKKQFMCEYCDYKSTKEQHLKIHTAEKPFKCGICDYKSARKPDLKCHLNTHTGDKKYLCAICDFKSGHRENLKRHLKTHTGQKPFLCEFCDFKSAYKLSLKYHLKAHTGEKLFTCEICDHKSINEGSLKVHLKTHSGRKSFRCVICNYTYAHKADLNNHLRKHTGEKPFQCAICDYKTAQKRFLKFHLETHMGEKPFICEICGVLYIHKHSLKNHLKTHTREKPSHTSEKPFKCVLCDFKTAHKNSLKYHLKTHTGEKPFSCGICDVKLARKANLVHHLKTHTGEKPFHCELCDYKCTRRSNLKDHLKTHTGERQFTCSICDYKFAHKGILKGHLKTHTNDKPFKCEICGYKCAKRHNLKLHLKTHTCEICDQKCANRQTLKVHSMTHSGEELFACSICDYKSIRSQYLKRHLRTHAIIKIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -