Rful006050.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:7335840-7337123[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00016 0.0046 18.2 0.6 1 23 95 117 95 117 0.97 2 12 3.5e-05 0.001 20.2 0.8 1 23 123 145 123 145 0.97 3 12 0.42 12 7.4 1.0 1 23 151 173 151 173 0.97 4 12 0.00074 0.021 16.1 0.1 1 23 179 201 179 201 0.98 5 12 8.2e-05 0.0024 19.1 3.2 1 23 207 229 207 229 0.97 6 12 0.00054 0.015 16.5 2.1 1 23 235 257 235 257 0.97 7 12 0.0045 0.13 13.6 1.9 2 23 264 285 263 285 0.97 8 12 0.00025 0.0072 17.6 0.4 1 23 291 313 291 313 0.98 9 12 0.00016 0.0046 18.2 3.2 1 23 319 341 319 341 0.99 10 12 0.00014 0.0041 18.3 3.3 1 23 347 369 347 369 0.97 11 12 0.00015 0.0042 18.3 3.1 1 23 375 397 375 397 0.98 12 12 0.00087 0.025 15.9 1.4 1 21 403 423 403 424 0.94
Sequence Information
- Coding Sequence
- ATGGAACAAGTGCTTTTGAAAGAGTCGTCTGATTATTTAAATGATTCAAAAATTTTATTACAAACCCAGTGTAATTCGATGGGTAATTATGAAGTTAAGAAAGAAGATCTAGTTGAAGACAAAAAGTTCTATTTGGAAGACCTTCACCACTCAATCGATATTAAAGAAGAAACCGAAGAAAGTGATAAAAGTAAGTCACAACAACTTGACGTTTGTAAGGGTGAAAAATTTAGATCTAAAATTGAAGACCATCGAGGTTCAAAAAATGCTACGAAGAAGTCGTTTGCATGTGAAATATGCGATTATAAATCTTCCACTAAAGCCTATATTAAACGGCACATGAAAATTCATACTGTTGATAAATCTTTTGCGTGTGAAATTTGTGATTTGAAATTTTCACTTAAATCATATTTGAAACTTCATGTGAGAAGACATACAAGTTCGAAACCATTTGAATGTGGAATATGTGAGTATAAATGTTTGACTAAGGGCCGTTTAAGTGACCACGTTAGAATACACTCTGGGGAAAAACCATTTGTTTGTGAAATTTGTGATTATAGAGGGGCACTTAAAATATCGTTAACGCGTCATATGAAAATTCACATTGGTGACAAACCATTTGCTTGTGAAATTTGTGACAATAAATATACAAATCGAAGTTGCTTGAAGCTTCACATGAAAACGCACACTGGCGAGAAACCTTTTGCGTGTGAATTCTGTGATTATAAATGTTCACGCACGGCACCATTAAAGGAGCATATGAGAACGCATACCGGGGATAAACCGCTGTCATGTGAAATTTGTGACTATAAATGTTCACTTACACAAGCGTTCACAGAGCATATGAGAACGCATACCGGCGAGAAACCGTACGCGTGTGAAATTTGCGAGTACAGAAGTGCACGTAAAGGAACTCTCAAACGGCATGTGAAATCGCATTTCGGTGAGAAACCGTTTACATGTGGAATTTGTGACTTTAAGTGTATTCGTAGACAGCAATTAAAACTGCACATCAGAACGCATACCGGTGAGAAACCGTTCGCGTGTAAAATCTGTGACTATAAATGTTCACGTAGATCATCATTAAAATACCATGTGAGGGCCCATATTGGCGAGAAACCGTTTGAATGTGACAGTTGTGACAAGAAATATTCAAGAAGAATATGTTTAAACGAGCACATGAGATTGCATACCGGCGAAAAACCGTATGCGTGTTCAATTTGTGACTATAAATGTTCATACAGACGTCAGTTAAACCAACACATGATTTCATGTAAAATATAA
- Protein Sequence
- MEQVLLKESSDYLNDSKILLQTQCNSMGNYEVKKEDLVEDKKFYLEDLHHSIDIKEETEESDKSKSQQLDVCKGEKFRSKIEDHRGSKNATKKSFACEICDYKSSTKAYIKRHMKIHTVDKSFACEICDLKFSLKSYLKLHVRRHTSSKPFECGICEYKCLTKGRLSDHVRIHSGEKPFVCEICDYRGALKISLTRHMKIHIGDKPFACEICDNKYTNRSCLKLHMKTHTGEKPFACEFCDYKCSRTAPLKEHMRTHTGDKPLSCEICDYKCSLTQAFTEHMRTHTGEKPYACEICEYRSARKGTLKRHVKSHFGEKPFTCGICDFKCIRRQQLKLHIRTHTGEKPFACKICDYKCSRRSSLKYHVRAHIGEKPFECDSCDKKYSRRICLNEHMRLHTGEKPYACSICDYKCSYRRQLNQHMISCKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -