Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996556.1:48757784-48760185[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0048 0.14 13.5 0.3 1 22 215 236 215 236 0.96

2 12 2.7 79 4.9 7.5 2 23 244 265 243 265 0.97

3 12 8.9e-05 0.0026 19.0 0.7 1 23 271 293 271 293 0.99

4 12 0.0001 0.0029 18.8 3.7 1 23 299 321 299 321 0.98

5 12 6.5e-05 0.0019 19.4 2.0 2 23 328 349 327 349 0.96

6 12 0.011 0.3 12.4 3.0 2 23 356 377 355 377 0.97

7 12 5e-05 0.0015 19.7 0.6 1 23 383 405 383 405 0.99

8 12 0.0021 0.062 14.6 0.6 1 23 411 433 411 433 0.97

9 12 4e-05 0.0012 20.1 2.4 1 23 439 461 439 461 0.98

10 12 0.00014 0.0041 18.3 3.6 3 23 469 489 467 489 0.98

11 12 7.9e-05 0.0023 19.1 0.3 1 23 495 517 495 517 0.99

12 12 3.1e-05 0.0009 20.4 2.6 3 23 525 545 523 545 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0048	0.14	13.5	0.3	1	22	215	236	215	236	0.96
2	12	2.7	79	4.9	7.5	2	23	244	265	243	265	0.97
3	12	8.9e-05	0.0026	19.0	0.7	1	23	271	293	271	293	0.99
4	12	0.0001	0.0029	18.8	3.7	1	23	299	321	299	321	0.98
5	12	6.5e-05	0.0019	19.4	2.0	2	23	328	349	327	349	0.96
6	12	0.011	0.3	12.4	3.0	2	23	356	377	355	377	0.97
7	12	5e-05	0.0015	19.7	0.6	1	23	383	405	383	405	0.99
8	12	0.0021	0.062	14.6	0.6	1	23	411	433	411	433	0.97
9	12	4e-05	0.0012	20.1	2.4	1	23	439	461	439	461	0.98
10	12	0.00014	0.0041	18.3	3.6	3	23	469	489	467	489	0.98
11	12	7.9e-05	0.0023	19.1	0.3	1	23	495	517	495	517	0.99
12	12	3.1e-05	0.0009	20.4	2.6	3	23	525	545	523	545	0.98

Sequence Information

Coding Sequence: ATGGAATCGTTTAATGTAAAATTGGCGCAGTCGACCAATCCTATTCATAAGTTTCAGCTCATCCTATTACGATTACAATTAAAATCAGGAGACGATAAAGATGGAAGAACAAAAATTGATACAAACACTGTTAAAATAGAACCAGAGCAAAGCGGAAATAAATTAGGAATAGAAAACTTAAACCTCACTTATGAAGAAATCACCGATATAGAAGATTTAAACTGCGATTTGCAAAAATATCTGCACCATTCGATCGATATTAAAGATGAATGGAAAATGGAACCACCCCAGCCTGATCAGGCAAACGAATTCAGTTGTGACGAAATAAGTACACCAGGATTTATCTTGGATCATGACAGAAGCCAGTTAATATACAAAGTCATCCTTTCAAGACTTCCATCAAAGTCAATTTCTCCAGGTCGCTTAAAATCTCCCTCGAAGAAGGATAGAATTAAAGATAAATATAAAATGGAACCACTCCAGCCTAATCAGGAAAAAGAATTCAGTTGTGACGAAATAGGTACACAACAAATCGTCTTGGATCACGATAGAAGTCAGTTAATATGTAAAGTCATCCTTTCAAGACTTCCATCAAAGTCAATTTCTTCGATTCGTTTGAAACCTCCCTTGAAGAAAAAAAATTTTTCCTGTAACCTTTGTAAATATGAAGGCGCTCGAAAAAGTGATTTAAAAGTTCATTTGAAGACTTACCCGGTCGTTAGAAAAAAAGAATGCTCATTTTGCCACAGTAAGTTCTCATGTAATTCAAAGTTAAAACTTCACGTGAGAACACATACGGGGGAAAAACCGTACACTTGTGATATCTGTCAGTTGAAACTTTCCAGCAAGACAACTTTGATACGGCATTTACGAATTCACACTCGTGAAAAAACGTATACGTGTGAAACTTGCCAGTTAAAATTTTCCACTAAGTCGTGCTTAAAAATTCATTTACAAGTACATTTCGGCCAGAGGTCGTGTACATGCGAAATTTGTAATTTAAAATTTACGAACAAGTCCCAACTGGCAATTCATTCAAGAATTCACACAGGGATAAAACCGGATCCTTGTAAATTTTGTGATTCAAAATTCAGACACTTAGGTACCTTAAAGTACCACTTAAAAAGTCATTCTGGTGAAAAAACCTATCGGTGCGCGGTTTGTAAATTAAAATATAAAACTAAGTGGGATTTAATTGTTCACCTACGAACTCATTCTGGAGAAAAAAAGTTTGCGTGTGAAATGTGTCCATCAAGATTTTCTAAATTGACGGACTTGCGAAATCATTCACGAATCCATACGGGTGAAAAACCGTATATTTGTGGAAGATGTAATTTTAAATTTTCGATTAAGTCGAACTTGAGAAGCCACATGCGTAGGCATACGGGTAAAAAACCGTACGGCTGTAAAATATGTGACTTAAAATTTTCACGAAAAAAGTATTTACATAATCATTTACAGACTCACACAGGTGAAAAACCGTATCGGTGCGAAATTTGCGGGTTGAAATATTCGAGGAAGGAATATATAGCAATTCATTTAAGATCTCATACAGGCGAAACGCCGTACGGCTGCAAGGTTTGCGAAACGAAGTTTAAATACAAAAGAAACTTACAGAGGCACTTAAAAACTCATAAGTGA
Protein Sequence: MESFNVKLAQSTNPIHKFQLILLRLQLKSGDDKDGRTKIDTNTVKIEPEQSGNKLGIENLNLTYEEITDIEDLNCDLQKYLHHSIDIKDEWKMEPPQPDQANEFSCDEISTPGFILDHDRSQLIYKVILSRLPSKSISPGRLKSPSKKDRIKDKYKMEPLQPNQEKEFSCDEIGTQQIVLDHDRSQLICKVILSRLPSKSISSIRLKPPLKKKNFSCNLCKYEGARKSDLKVHLKTYPVVRKKECSFCHSKFSCNSKLKLHVRTHTGEKPYTCDICQLKLSSKTTLIRHLRIHTREKTYTCETCQLKFSTKSCLKIHLQVHFGQRSCTCEICNLKFTNKSQLAIHSRIHTGIKPDPCKFCDSKFRHLGTLKYHLKSHSGEKTYRCAVCKLKYKTKWDLIVHLRTHSGEKKFACEMCPSRFSKLTDLRNHSRIHTGEKPYICGRCNFKFSIKSNLRSHMRRHTGKKPYGCKICDLKFSRKKYLHNHLQTHTGEKPYRCEICGLKYSRKEYIAIHLRSHTGETPYGCKVCETKFKYKRNLQRHLKTHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -