Rful016930.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996559.1:30611137-30615339[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00062 0.018 16.3 8.6 1 23 85 107 85 107 0.96 2 11 4e-05 0.0012 20.1 1.7 1 23 113 135 113 135 0.99 3 11 8.4e-05 0.0024 19.0 0.1 1 23 141 163 141 163 0.97 4 11 2.2e-05 0.00064 20.9 3.7 1 23 169 191 169 191 0.99 5 11 5.2e-05 0.0015 19.7 4.4 1 23 197 219 197 219 0.98 6 11 2.5e-05 0.00072 20.7 1.4 1 23 225 247 225 247 0.98 7 11 0.0007 0.02 16.2 3.1 1 23 278 300 272 300 0.98 8 11 0.00055 0.016 16.5 3.4 1 23 306 328 306 328 0.98 9 11 0.00034 0.0098 17.1 7.8 1 23 334 356 334 356 0.98 10 11 9e-06 0.00026 22.1 6.7 1 23 362 384 362 384 0.98 11 11 0.00011 0.0033 18.6 4.2 1 23 390 412 390 412 0.99
Sequence Information
- Coding Sequence
- ATGGAGGAAGTGGAAGTCAAATTAGAAGATTATTCCATTAATATTAAAAAGGAAGCTGATCCAATTGTAGAATATGAAGAGGAGAGCAGTGAGAAAATTCCGTGCCATTCAAATAGCTACTCTGAAATTAAGACAGAAGGAATAGAATTTAAATTAGAAAATTTGCATCACACCTTTGACATTAAAGAAGAAACTTCAGTTGTCGAGTGTCAGCCAGATAACGATTTTAAACATGGAAAAAAGGGAAAACCATTTCTATGTAAAATCTGTGGCCACAAATGTAAACAGAAAGTACATTTACAAAGACATTTAAAAACTCATACGGGTGAGAAACCGTACACATGTGAAATTTGTAACTATAAATGTGCCCAAAAAGTTGGTTTAAAAATTCATTTGAGAACTCACACCGGTGAAAAGCCGTTTGCATGTGAAGTTTGTGGTAATAATTTTAAAGAAAAGGGCGCTTTGAAAATTCACGTAAGAACTCACACTGGCGAGAAGCCATATACCTGTGAATTTTGCGATTATAAGTGCACACAAAAAGGAAATTTAAAAATTCACGTAAGGACTCACACTGGTGAGAAACCGTTTACATGTGAAATTTGTAACTATAAATGTTCACAAAAAGAAAATTTTAAGGTTCATCTGAGAAGTCATTCTGGGGAAAAGGACTTTGTGTGTGAAGTTTGTGGTTGCAAATTTAAAGGAAGAGGAGCTTTGAAAAATCATTTAAAAACCCACACCGGTGAGAATCCGGTTACGTGTGAAATGTGTAATTTTAAATGTGAAGATTTTAAAGTTCCTCCGAAAAGTCACACGTGCGATAAGCCGTTTGCGTGTGAGTTTTGTAGTTACCGATGCACACAGAGAGGATCTTTGATAATTCATATAAGAACTCATACCGGGGAAAAACCGTATACGTGTGAAATTTGCGATTATAAATGTTCGAAAAAGGCCAACTTGTACATGCACTTCAGAATACATACGGGCGAGAAACCGTTCACATGTGATTTTTGTGGATATAAATGTGCACACAAATCGCATCTAAAGACCCATATAAAAATTCATACCGGTGAAAAACCGTTTAGTTGTAAAATTTGTGATTACAGTTGTATACGGAACTCACATCTCAAAAGACATTTGAAAACTCACACCGAAAGGAAAATTTTTACTTGTAAAATTTGTGACGTTAAATACAAACATAAAAATGCTTTTGAAAGGCATTTAAAAACTCATACCGGTGGAAAATAA
- Protein Sequence
- MEEVEVKLEDYSINIKKEADPIVEYEEESSEKIPCHSNSYSEIKTEGIEFKLENLHHTFDIKEETSVVECQPDNDFKHGKKGKPFLCKICGHKCKQKVHLQRHLKTHTGEKPYTCEICNYKCAQKVGLKIHLRTHTGEKPFACEVCGNNFKEKGALKIHVRTHTGEKPYTCEFCDYKCTQKGNLKIHVRTHTGEKPFTCEICNYKCSQKENFKVHLRSHSGEKDFVCEVCGCKFKGRGALKNHLKTHTGENPVTCEMCNFKCEDFKVPPKSHTCDKPFACEFCSYRCTQRGSLIIHIRTHTGEKPYTCEICDYKCSKKANLYMHFRIHTGEKPFTCDFCGYKCAHKSHLKTHIKIHTGEKPFSCKICDYSCIRNSHLKRHLKTHTERKIFTCKICDVKYKHKNAFERHLKTHTGGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -