Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996559.1:10563444-10565855[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0064 0.18 13.1 1.6 2 23 191 211 190 211 0.97

2 11 0.016 0.47 11.8 3.0 2 23 219 239 219 239 0.97

3 11 2e-06 5.6e-05 24.2 1.3 1 23 244 266 244 266 0.98

4 11 2.7e-05 0.00078 20.6 0.2 1 23 272 294 272 294 0.98

5 11 1.5e-05 0.00043 21.4 5.4 1 23 309 331 309 331 0.98

6 11 0.00078 0.023 16.0 4.0 1 23 354 376 354 376 0.97

7 11 0.051 1.5 10.3 0.2 1 23 381 403 381 403 0.94

8 11 0.00028 0.0082 17.4 2.5 1 23 409 431 409 431 0.96

9 11 2e-05 0.00057 21.0 4.4 3 23 439 459 437 459 0.96

10 11 2.2e-07 6.3e-06 27.2 0.5 1 23 465 487 465 487 0.99

11 11 0.0002 0.0058 17.9 1.6 1 23 493 515 493 515 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0064	0.18	13.1	1.6	2	23	191	211	190	211	0.97
2	11	0.016	0.47	11.8	3.0	2	23	219	239	219	239	0.97
3	11	2e-06	5.6e-05	24.2	1.3	1	23	244	266	244	266	0.98
4	11	2.7e-05	0.00078	20.6	0.2	1	23	272	294	272	294	0.98
5	11	1.5e-05	0.00043	21.4	5.4	1	23	309	331	309	331	0.98
6	11	0.00078	0.023	16.0	4.0	1	23	354	376	354	376	0.97
7	11	0.051	1.5	10.3	0.2	1	23	381	403	381	403	0.94
8	11	0.00028	0.0082	17.4	2.5	1	23	409	431	409	431	0.96
9	11	2e-05	0.00057	21.0	4.4	3	23	439	459	437	459	0.96
10	11	2.2e-07	6.3e-06	27.2	0.5	1	23	465	487	465	487	0.99
11	11	0.0002	0.0058	17.9	1.6	1	23	493	515	493	515	0.95

Sequence Information

Coding Sequence: ATGGAGGAAACTTTATCAACACAATTTAATTACGAAGAGCTTATTTCGCTAAACAAATTTTCGAAAATATGCCGCATTTGTCTAGTGGAAATTAAGGGGACTCGGACTCCGCTTGCGGATGTGTTTTTTAAAGATAAAAGGATTGCCGATATTTTGTCATCACATTTAATAATAGAGGTAAAAGACGATTTTTTGCCACAACACATTTGTGGTCATTGCAGTGAGGAAATTCTCAAGGTGTGTTCTATCATAGAAAAGTGTCAAAGTGCTGATGCCCTCCTTCGAAGTTACTTAAAATTTATGCTTAAAAACGAGAAATTAGGAATATGTGAGGTGGTAATTAAAGAAGAAGAGGTAATTACGGATATTATGAATTTAGAGGAAAGAGAAGAAATGGAGGGTGAAGTTGATTATGCCAATACCTCAGAAAATGATGGAGATGCAGTAATTGTAGATGGATGGTATAGTAATATTGCCAGTACTGAATGCAAAATGTTGGAGGTTAACAGTAACGATTTAAACATTGAAAGAGTTCAGGTTGCAGAAGAGGAAGAAAGAGTATCCAAAAGCCAATGTCCCACATGTTTAAAATATTTTACCAGCACTAAGCTTAACCAACACATGAAAGTTCACACAGACAACGTTGGTAGCCGTCAATGCCCCACATGTTTCAAGTATTTTGCTAAGCAACATTTAGAGCGACATATGAAAGTTCACAAAGATAAGCCTTTTGAGTGTCAAGTGTGTTTTAAAATATTTAGCTTTAAAGCAAATTTAAAAAGGCATATGATGGTACACACCGGGGAACGACCGTACGTTTGTGAAATTTGTGGAAAAGCATTCAGTCAATATGTGGTGCTTGCTAGCCATAAAAAAACGCACGTTTCGTATGAACATATTAATCCTGAAACTGGTGTACCGAGCTTTACGTGTTCACATTGTGGAAGAATATTTAAACGTTCGGCACACTACAATATCCATATAAAAAAACATGAAAAGAATCAAACTAAAGTAATAAAAGCTGAAGACAAAGTATCTGAAGAACCAATTGTAAAAATGCATCAGTGCAGCGTTTGTACGAAAAGCTACAAAACAAAAGCTTCACTATACACACATCGACTACAGCATCGTGAAAAGTCATTCTTGTGTAATGCATGTGGGAAACGTTTTCTAACAAGGGCTGCTTTGGTGGAACATTTGACCATGCACACTGGAGAAAAACCGCATCACTGTAAATTTTGTGATAAGTCATTTGCACGTATAGTCAATTTAGAATTGCACTTATTAATTCACATGGGCGTAAAACCACATCTCTGTAGTACATGTGGAAAGTCCTTCACCCAAGCTACTCATCTTAAGTATCATATTTTGACACATACAGGTGAAAGACCATACGAGTGCAATTACTGTGGAAAACGATTTGCATTAAAAGGAAATTTGACCGTTCATGTTCGTACACATACCGGAGAAACGCCATACTTATGTTCTATTTGTAACAAAGGATTTTATGACTCGAGCAGCATGAAAAAACATAAAAAAGGACATGAAAAGTTGACAACCATGTAG
Protein Sequence: MEETLSTQFNYEELISLNKFSKICRICLVEIKGTRTPLADVFFKDKRIADILSSHLIIEVKDDFLPQHICGHCSEEILKVCSIIEKCQSADALLRSYLKFMLKNEKLGICEVVIKEEEVITDIMNLEEREEMEGEVDYANTSENDGDAVIVDGWYSNIASTECKMLEVNSNDLNIERVQVAEEEERVSKSQCPTCLKYFTSTKLNQHMKVHTDNVGSRQCPTCFKYFAKQHLERHMKVHKDKPFECQVCFKIFSFKANLKRHMMVHTGERPYVCEICGKAFSQYVVLASHKKTHVSYEHINPETGVPSFTCSHCGRIFKRSAHYNIHIKKHEKNQTKVIKAEDKVSEEPIVKMHQCSVCTKSYKTKASLYTHRLQHREKSFLCNACGKRFLTRAALVEHLTMHTGEKPHHCKFCDKSFARIVNLELHLLIHMGVKPHLCSTCGKSFTQATHLKYHILTHTGERPYECNYCGKRFALKGNLTVHVRTHTGETPYLCSICNKGFYDSSSMKKHKKGHEKLTTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -