Rful018700.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996559.1:25472665-25478318[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00028 0.008 17.4 0.9 1 23 102 124 102 124 0.98 2 15 0.00037 0.011 17.0 3.6 1 23 130 152 130 152 0.98 3 15 0.0013 0.038 15.3 1.2 1 23 158 180 158 180 0.98 4 15 0.034 0.97 10.9 1.5 1 23 186 208 186 208 0.97 5 15 1.2e-05 0.00034 21.7 2.8 1 23 214 236 214 236 0.98 6 15 0.00046 0.013 16.7 0.7 1 23 242 264 242 264 0.98 7 15 0.00097 0.028 15.7 5.0 1 23 270 292 270 292 0.97 8 15 0.021 0.6 11.5 3.9 1 23 298 320 298 320 0.98 9 15 0.0062 0.18 13.2 3.3 1 23 327 349 327 349 0.98 10 15 0.0038 0.11 13.8 1.2 1 23 355 377 355 377 0.98 11 15 1.5e-06 4.2e-05 24.6 1.0 1 23 383 405 383 405 0.99 12 15 0.19 5.4 8.5 3.5 2 23 412 433 411 433 0.95 13 15 0.00095 0.027 15.7 1.8 1 23 439 461 439 461 0.98 14 15 0.0046 0.13 13.6 0.7 1 23 467 489 467 489 0.98 15 15 0.0022 0.062 14.6 5.6 1 23 495 517 495 518 0.96
Sequence Information
- Coding Sequence
- ATGGATTCTGAATTAGAACAATTGCACCACTCCATTGATATTAAGGATGAAGACGATCCTAAATTAGAACATGAAGAGTATAGTAATGAGGGTACTCCAGGGGATTCGATTAGCCACTCTGAATTTGAGATGGAAGAAACAGGGTTAAATTTGGAAGATTTGGATCATCAGGAAGAAACCTCAAAAACAAAATCTGGTGGAAAAAAAAAATCAAGCAAACTTGCCAAAAAAACATGTCAAATTTGCGGTTTTAAATGTGTACATTTAAAAAGTCATATGTTAACTCATACCGGCGAGAAACCGTTTACGTGTGAAGTTTGTAACCTCAAATTTTCTCTGAAGAAAGGTTTAAAAGAACATTTGAAAATTCACACAGGTGAGAAACCGTTTACTTGTAAAATTTGCGGTTACAAATGTACACGGAGAGCCCGTCTCAACTGGCATTTAAAAAATCATTCAGGCGTGAAATCGTTTATGTGTGAAATTTGTGACTTTAAATCTGTACATAAGGCCAGTTTAAGGGATCATTTAAAAATCCACACGGGCGAGAAACCGTTTACGTGTGCAATTTGCGGTTCCAAATTTGCCTTAAGAAACCATATCATACGTCATTTAAAATTTCATACAAGCGAAAAACAGTTTGAATGTGAAATTTGTAACAAAAAGTTTACTTTGAAGCAATATTTGAAACAGCATTTGAAAACTCATACAGGCGAGAAATCGTTTATGTGTACACATTGCGACTACAAATCTGTAGGTGCGGGGGCGTTAAAAAGGCATTTAAGGGTTCATACAGGCGAGAAACCGCATAGGTGTTTGATTTGTGACTATAAATGTTCAAATAAAGGCAGTTTAAAGAAACATTTAGAAAGTCATTCAGACGAAAAACCGTTTATATGTAAAACTTGTGGTTACAAATGTTCACAAAAAATTATTTTAAAAACACATTTAAAAACTCACCCATGCGAGAGAAAGGTACACACATGTGAAATTTGCAACTTCAAAACTGTACATGTAGGAAGTTTAAATACGCATTTGAGAACTCACACTGGCGAGAAACCGTTTAGTTGTGAAATTTGCGACAACAAATTTTTAATGAAGGAAACGTTAAAAAGGCACTTAATGACCCACACAGGTGAGAAGCCGTTTAAATGTGAAGTTTGTGACTTAAAATATGCAGATAAGAGTAGTTTAAAAAATCATTTAAGAACTCATACGGGCGAGGAAATGTTGAAGTGTGAACTTTGTAACTTCAAAACTGTACATAAAAGAAATTTTAAAAATCATTCAATAATTCACTCATCAGAGAAACCGTTTGAATGTGAAATTTGTGATTTCAAATCTGTACATAAAAATGGTTTAAAAAATCACTTACAGACTCATACAGGCGATAAACCATTTAAGTGTGGAGTTTGTGATTACAGATCTTTACGGAAGTCGGCTGTAGAAAGACATTTAAGGACTCATACAGGTGAGAAACCGTTTTCCTGTGAATTTTGTGACTACAGATCTGCAAATAAACACAATTTGAAAATTCATTTAAAAAGGCATCATTAA
- Protein Sequence
- MDSELEQLHHSIDIKDEDDPKLEHEEYSNEGTPGDSISHSEFEMEETGLNLEDLDHQEETSKTKSGGKKKSSKLAKKTCQICGFKCVHLKSHMLTHTGEKPFTCEVCNLKFSLKKGLKEHLKIHTGEKPFTCKICGYKCTRRARLNWHLKNHSGVKSFMCEICDFKSVHKASLRDHLKIHTGEKPFTCAICGSKFALRNHIIRHLKFHTSEKQFECEICNKKFTLKQYLKQHLKTHTGEKSFMCTHCDYKSVGAGALKRHLRVHTGEKPHRCLICDYKCSNKGSLKKHLESHSDEKPFICKTCGYKCSQKIILKTHLKTHPCERKVHTCEICNFKTVHVGSLNTHLRTHTGEKPFSCEICDNKFLMKETLKRHLMTHTGEKPFKCEVCDLKYADKSSLKNHLRTHTGEEMLKCELCNFKTVHKRNFKNHSIIHSSEKPFECEICDFKSVHKNGLKNHLQTHTGDKPFKCGVCDYRSLRKSAVERHLRTHTGEKPFSCEFCDYRSANKHNLKIHLKRHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -