Rful007942.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:6841702-6843129[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00018 0.0052 18.0 1.3 1 23 64 86 64 86 0.98 2 13 0.0034 0.097 14.0 2.7 1 23 92 114 92 114 0.97 3 13 0.00011 0.0032 18.7 0.2 3 23 122 142 120 142 0.96 4 13 0.013 0.38 12.1 5.6 1 23 148 170 148 170 0.98 5 13 0.00046 0.013 16.7 4.8 1 23 176 198 176 198 0.97 6 13 3.6e-05 0.001 20.2 1.1 2 23 204 225 203 225 0.96 7 13 8.3e-05 0.0024 19.1 0.7 1 23 231 253 231 253 0.97 8 13 0.001 0.029 15.6 1.2 2 23 260 281 259 281 0.97 9 13 0.0013 0.038 15.3 4.9 1 23 287 309 287 309 0.98 10 13 0.00073 0.021 16.1 5.3 3 23 317 337 315 337 0.98 11 13 0.021 0.6 11.5 3.4 1 23 343 365 343 365 0.97 12 13 0.00028 0.0082 17.4 2.2 2 23 372 393 371 393 0.97 13 13 2e-05 0.00056 21.0 7.2 1 23 399 421 399 421 0.99
Sequence Information
- Coding Sequence
- ATGCAACGGATCGACAAAGTAATGGAACCTCCAGTTAATTTAATTAGTAGTTCTAAAATTAAAATCGAAGACTTGGAAGATGTGAAGTTTAAGTTGGAAGATTTACATCACTCGATAGACATCAAAGACGAGAGCGATGTAGAACAATTAGCACCGGAGAAACCCGTAAGGAAAATTAAACGTTTAGATTTTGTTTGTCAGTTGTGCGACTATAAAACTTCATTAAATTCCAGTTTAAAACGGCATTTAAAAATTCATACAGGCGAGAAACGTTTTGCGTGTGAGATTTGTGACTATAAATGTATTGAAAAACAATCTTTTAAAAGACATTTAAATAGTCACACAGGCGTGAAACCTTTAGCTTGTGATATTTGTGACTATAGAAGTTCCGAGAAATCCGATTTAAATAGACATTTAAAAGTTCACTCAGGAGAAAAACCGTTTTCTTGTGGGTTTTGTAATTTTAAATGTAGAAACAGATATTATTTAAAACAACATTTAAATATTCACACACGAGAGAACTTGTTCGCTTGTGGAATTTGTGACTATAAGTGTGCACATAGTTCCAATTTTTATAGACATTTAAAAACTCACTCAGGGGAACCGCTGTCTTGTGATATTTGTGACTATAAAAGTACAAACAGATCATATTTAAAAAGGCATTTAAAAATTCACACAGGAGAAAAACCATTTGCTTGTGAGGTGTGTGACTATAAATGTGCTCAAAGGTCAGATTTAAAAATCCATTTAAATATCCACACAGGGGAGAAGCCGCTTTCTTGTGATATTTGTGACTATAAGTGTGCACTTATGGGAAATTTAAAAAGACATTTAAATACTCACACAGGGGAGAAACCATTTTCTTGTTTTATTTGTAACTATACATGTTCACAAGGAGCACATTTAAAAAGGCATTTAAAAATTCACACAATTGAAAAACCGTTTGGTTGTTATATTTGTGACTATAAATGTGCGCACAGATCGTATTTAAAAAAGCATTTAAGAACTCACTCGGGAGAATATCCGTTTGCTTGTGAGGTTTGTGACTATAAATGTGCTCAAAGGTCAGCTTTAAAATGCCATTTAAATACTCACACAGGGGAAAAACCGCTCTCTTGTGATGTTTGTGGCTATAAATTTGCATGCAGCTCAAATTTAAAAAGTCATTTAAAAACTCACACAGGAGAAAAACCGTTTACTTGTGATATTTGTGGCTATAAATGTTCACACAAATCATATTTAAGAAAGCATTTAAAAACTCACATCAAAAATTTTCTGCAATGA
- Protein Sequence
- MQRIDKVMEPPVNLISSSKIKIEDLEDVKFKLEDLHHSIDIKDESDVEQLAPEKPVRKIKRLDFVCQLCDYKTSLNSSLKRHLKIHTGEKRFACEICDYKCIEKQSFKRHLNSHTGVKPLACDICDYRSSEKSDLNRHLKVHSGEKPFSCGFCNFKCRNRYYLKQHLNIHTRENLFACGICDYKCAHSSNFYRHLKTHSGEPLSCDICDYKSTNRSYLKRHLKIHTGEKPFACEVCDYKCAQRSDLKIHLNIHTGEKPLSCDICDYKCALMGNLKRHLNTHTGEKPFSCFICNYTCSQGAHLKRHLKIHTIEKPFGCYICDYKCAHRSYLKKHLRTHSGEYPFACEVCDYKCAQRSALKCHLNTHTGEKPLSCDVCGYKFACSSNLKSHLKTHTGEKPFTCDICGYKCSHKSYLRKHLKTHIKNFLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -