Rful030531.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996555.1:7415286-7416877[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0034 0.099 14.0 3.8 3 23 186 206 185 206 0.99
2 11 0.00014 0.0041 18.3 2.2 1 23 212 234 212 234 0.98
3 11 0.00016 0.0046 18.2 1.1 1 23 240 262 240 262 0.98
4 11 0.0017 0.05 14.9 0.1 1 23 268 290 268 290 0.96
5 11 0.0065 0.19 13.1 0.7 1 23 297 319 297 319 0.99
6 11 0.006 0.17 13.2 0.3 1 21 325 345 325 348 0.90
7 11 0.00017 0.005 18.1 5.9 1 23 354 377 354 377 0.95
8 11 0.00017 0.0049 18.1 0.3 3 23 388 408 387 408 0.98
9 11 1.4e-05 0.0004 21.5 0.5 1 23 414 436 414 436 0.98
10 11 2.3e-05 0.00065 20.8 1.1 1 23 442 464 442 464 0.95
11 11 8.1e-08 2.4e-06 28.5 2.6 1 23 470 492 470 492 0.99

Sequence Information

Coding Sequence
ATGGAATTATTTACAAAATACGAAAATTTGCAAATTGAAGAAGTTTGCAGGGTATGTCTCAACAAAAGAGATCACATGTTTTTAATTTGTGATGCTGGGGTAGCCGATATGTTGTTGGAATGTGCTTCAGTGCAGATAACTCCAGAAAATGGGTTGTTCAACTTAATATGTAGTAATTGTACCACCGAAATCAGGCACTGGTATGTTTTTAAGCAAAAGGTGGTTCAATCTTTCGAGATCGGCCGTTGGTTGTTAAATAAAAAAGGTAAAAGTTTCCTGGAAAACGAAAAAAATTCCGATCCTGTAGAAGAACCAAACTTTTTTGTTGGAGATGAAAACAGCATCGCTTCTAGTTTGTCCAACACGAGTTCCATCATAGAAGATGTAAGAAAATTGGAAAATCTTTTAGACAGTTACGCTCCAGATTTTGAGACGGAAAAATGCCAAGTTACTTCTGGAGTTGAATCCATAAATGACACGATAAATAACGTAGTCACCTCTCACGAATCCTCAGAAACAGTGGTTAAGCGCAAAAAAACTCCAGAAGATTTGTTATGCACAGTTTGTGGAAAGCAATGTTCATCCACCAACTCTTTCAACAGACACGTCAAAACGCACGATTCCACTCGTCCCTATATTTGTTGCAAATGTGACAAACCCTTCAAAACCTCTCAAGTTTTAGCCGAACACATGAAGCGCCATTATGACGACAGAAGGCACAAGTGCGGAGTTTGTGGCCAAAAATTTTACGCTAAAGCCAGCTTAAACGACCACCTCAGATCCCACACCGGAGAGAGGCCATTCAAATGTGAAGTTTGTGAACGTGCATTTTCCACTAAAGCAATACTAAGGCAACACGTTGTGGTCCACACTGTTCGAGAAAAAAGATTCCAGTGCGAAATTTGCAATAAATTCTTGTTGACAGCGGGAAGTTTGGAAACACACAAGCGCAAACACACTGGAGTCAAACCTTTTCCATGTTCCAGTTGCGAGAAGGCCTTTTTTACGAAGGAAGCCATGCAGAGACATTACGGAGCGATTCACGATATCGAAAATAACTTTCTATGTAATATTTGCTCAAAAGTTTGCAGTACAAAAGTTCATTTGAATAACCACATGAAAAAGAAACACTTGGGTCTTGGTCGACCACCCAATGCAATTTGTAACGAATGCGGTAAACAATGCGGTTCTGCAGCTGAACTAAAGGTACACCTTCGTGTTCACACAGGGGAGCGGCCTTACGTTTGCGATATATGTGATAAACGATTCATAGCCAAAGGGAATTTGAATTCACACAAACAGAGGCACATGGGAAAAAAACCGTTTTTGTGTAACCACTGTGGAAAAGCATTTGGAGAGAAGTCGACCTTAAAAGTCCACGAGAGGATCCATACAGGAGAACATCCTTACACTTGCAATATATGCGGAAAATGTTACATCCAAAGTAGCGCTCTTAGAACGCATATGAAAACACATTGGAAATAA
Protein Sequence
MELFTKYENLQIEEVCRVCLNKRDHMFLICDAGVADMLLECASVQITPENGLFNLICSNCTTEIRHWYVFKQKVVQSFEIGRWLLNKKGKSFLENEKNSDPVEEPNFFVGDENSIASSLSNTSSIIEDVRKLENLLDSYAPDFETEKCQVTSGVESINDTINNVVTSHESSETVVKRKKTPEDLLCTVCGKQCSSTNSFNRHVKTHDSTRPYICCKCDKPFKTSQVLAEHMKRHYDDRRHKCGVCGQKFYAKASLNDHLRSHTGERPFKCEVCERAFSTKAILRQHVVVHTVREKRFQCEICNKFLLTAGSLETHKRKHTGVKPFPCSSCEKAFFTKEAMQRHYGAIHDIENNFLCNICSKVCSTKVHLNNHMKKKHLGLGRPPNAICNECGKQCGSAAELKVHLRVHTGERPYVCDICDKRFIAKGNLNSHKQRHMGKKPFLCNHCGKAFGEKSTLKVHERIHTGEHPYTCNICGKCYIQSSALRTHMKTHWK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00270210;
90% Identity
iTF_00270210;
80% Identity
-