Rful011728.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:20550670-20564784[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.5e-05 0.0013 19.9 2.6 1 23 275 297 275 297 0.98 2 10 1.8e-08 5.3e-07 30.6 0.8 1 23 303 325 303 325 0.98 3 10 0.00063 0.018 16.3 2.0 1 23 331 353 331 353 0.97 4 10 0.0031 0.091 14.1 2.3 1 23 359 381 359 381 0.98 5 10 0.00017 0.005 18.1 2.1 1 23 391 413 391 413 0.98 6 10 6.2e-05 0.0018 19.5 5.0 1 23 419 441 419 441 0.99 7 10 7.9e-05 0.0023 19.1 1.4 1 23 447 469 447 469 0.98 8 10 3.5e-05 0.001 20.2 0.9 1 23 475 497 475 497 0.98 9 10 2.8e-05 0.00081 20.5 0.7 1 23 503 525 503 525 0.99 10 10 0.00029 0.0083 17.4 5.3 1 23 532 554 532 554 0.98
Sequence Information
- Coding Sequence
- ATGACGATGGATGAAAAATTTGAAAAGTTAAATAAAACCAATTACTTGCAATGGTCAATACGAATGCGTGGCTTATTGGAATTAAAAGATTGTTCGGATGCCATTGGATTCAATACAAATGTATTAACCGATGAACAAAGAAAAGCAGATGAAAAATGCAAATCGTTACTTTATCTCAGTGTAGATAAGGACAACTTGGATATTATCGCAGGGTGCACAACGGCAACCGAAATCTGGAATAAGTTAAAGGATATTTACACCGAATTTCATGGTTATCATGCTATACTTGTACTAAAGGAATTTGTACATTTAGAGATGGATAGGAGTGAGAACATTCTAGAGTATGTGAATCGAAGGAACTGCTTATACAAAAAAGTGCAAGATGCTGGATTCACATTCGAAAGCAAAGTGTTAATGGGATTAATGTTAATTGGATTGTCGATGGAGTATGAACACCTAAGGAAAACTGTAACGATTGATGACGATAGTTTAACCCCAGGCAGCTTACAAATGCGATTAGTCAAAGAAGAGAGACGTCTCAAACACACGGCAACTACAAGCGATGCAATTGAGTGTACGGAAGACCCACTGAGCATGGAAATGGACACAAATTCAAATGAAAGTTCATGCCATTCACAAGTTAAGATGGAATTCATGGAACGAGAATTCAAATCGGAAGAATTTCAACATTCAATTGATATTAAAGAAGACCCTTTGTTGCTGGAAATTATTGAAACAGAAGAAGAAGAATGCAAACCTGAAATAAGTGGGAAACAATTTACACAAATTAAACAACTAGAAATTCACACTGCCGAGAAGGAGTTTACATGTAAAATTTGTGCTAAGGAATTTACACATAAAAAATTACTGGAGAGGCACCTGGGAACCCATGCAAGTGCGAAACAATTTTCGTGTGAAATTTGTGGCTATAAATTTGCACGTAAAAGTAATTTGGAAAGGCATATAAGAAGTCATTCTAACGAGAAGCCGTTTAAGTGTGAAATTTGTTCTTATAATTTTTCAGAGAGTCGACATTTAAAAATGCATTTAGGAATTCACACTGGTGAAAAATCCTTCAAGTGTGAAATTTGTGTCTATAAATGTGCACGTAGAAGAGATTTAGAAAGTCACTTAAAGCTTCATTTAAGTGCTCCATTCGGGGAGAAGCCGTTCAATTGTGAAATATGTGATTATAAATGTGTACGTAAAAGTAATTTAGACATGCATTTATTAACTCATTCGGGTCAGAAACCCTTTAAGTGTGACATTTGTGATTATAAATGTGTACATAAAGGAGATTTAAACAAACATTTAAAAACTCATACTGGGGAAAAACCATTTTCGTGCGAAATTTGTGGCTATAAATGTATAGATAAAGGAAATATCAATACTCATTTACGAACCCATACCGGGGAGAAACCGTTTGTTTGTGAAATGTGTGACTTTAAATCTTCACGTAAAGATGGTTTAAAACGGCATTTAAGGATTCACACCGGGGAGAAGCCTTTCAAGTGTGAAATTTGCGATTACAGTAGTGCATATATGAGTAACTTGAAAAATCATTTAATGACTCATAGTAATGATCAAAAAATATTTTCGTGTAAAATTTGTGGCTATAATTGTACTCAAAAACGAAGTTTTAAAGTGCATCTAAAAACGCATTAG
- Protein Sequence
- MTMDEKFEKLNKTNYLQWSIRMRGLLELKDCSDAIGFNTNVLTDEQRKADEKCKSLLYLSVDKDNLDIIAGCTTATEIWNKLKDIYTEFHGYHAILVLKEFVHLEMDRSENILEYVNRRNCLYKKVQDAGFTFESKVLMGLMLIGLSMEYEHLRKTVTIDDDSLTPGSLQMRLVKEERRLKHTATTSDAIECTEDPLSMEMDTNSNESSCHSQVKMEFMEREFKSEEFQHSIDIKEDPLLLEIIETEEEECKPEISGKQFTQIKQLEIHTAEKEFTCKICAKEFTHKKLLERHLGTHASAKQFSCEICGYKFARKSNLERHIRSHSNEKPFKCEICSYNFSESRHLKMHLGIHTGEKSFKCEICVYKCARRRDLESHLKLHLSAPFGEKPFNCEICDYKCVRKSNLDMHLLTHSGQKPFKCDICDYKCVHKGDLNKHLKTHTGEKPFSCEICGYKCIDKGNINTHLRTHTGEKPFVCEMCDFKSSRKDGLKRHLRIHTGEKPFKCEICDYSSAYMSNLKNHLMTHSNDQKIFSCKICGYNCTQKRSFKVHLKTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -