Rful009843.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:16607399-16614383[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 1e-06 3e-05 25.1 2.8 1 23 65 87 65 87 0.99
2 11 0.00066 0.019 16.2 6.7 1 23 93 115 93 115 0.99
3 11 1.1e-05 0.00031 21.9 4.7 1 23 121 143 121 143 0.99
4 11 0.02 0.58 11.6 6.5 1 23 149 171 149 171 0.99
5 11 1.6e-05 0.00046 21.3 4.9 1 23 177 199 177 199 0.99
6 11 3.2e-05 0.00092 20.4 4.5 1 23 205 227 205 227 0.99
7 11 7.7e-05 0.0022 19.2 2.6 1 23 233 255 233 255 0.99
8 11 0.00082 0.024 15.9 5.5 1 23 261 283 261 283 0.99
9 11 1e-05 0.0003 21.9 1.9 1 23 289 311 289 311 0.99
10 11 3.7e-05 0.0011 20.2 3.4 1 23 317 339 317 339 0.99
11 11 0.0017 0.05 14.9 3.6 1 22 345 366 345 366 0.96

Sequence Information

Coding Sequence
ATGGTATCTTTGTTACAGGGTACTCTATCAAATTCAAATCGTCACTCCAAAATTAAGAGTGAAGAAATAGAATTGAATTTGGATAAGTTACATCATCATCTCAGTCATAGTCGAGCAGAGATTTCAGTTCATTTTCAGAAGACAAAAACTGATTGTAATCCGCTTACTACGCCTCAAATTTCCAACTATAAGTTTAAGTGTGAAATTTGCGACCACCAATTCACACAGAAGGGAAATTTAAAAGTTCATTTAAGAACGCATTCAGGATATAAACCGTTTCAGTGTGAAATTTGTGACTACAAATGTGCACTGAAGCATCATTTAGAAAGGCATTTAAGAACGCATTCAGTAGATAAACCGTTTCAGTGTGAAATTTGTGACCATAAATTTGCACATAGGGATAGTTTAAAAAACCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTTATTACAAATGTGCACTGAAGCATCATTTAGAAATACATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTGCACATAAGAGTAATTTAAGAGACCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTGCACAGAAGCGATATTTAAAAAGGCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAGTTTGTGACTATAAATGTGCAAGGAAAGGATATTTAAAAGTTCATTTAAAAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTGCTCATAGGAATAGTTTAAAAAGCCATTTAAAAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATGAATGTACGCGGAAGGGAAGTTTAGAAAGTCATTTAAGAACGCATTTAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTGCAAATAGGAGTAGTTTAAGATACCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAATGTGAAATTTGTGACTATAAATGTGCACATAGGAGTAGTTTAAAAAGTCATTATAATACTATTGAAACTGTCTTTGTTCGGATTGGTAATATTATTCTTGGTGCGGTTTATATACCACCCGATTCTAATGTTCAAGACTATGATGATTTCTGCGACATTATAGACAATATTGCTAATCATGACCCATTTTCAAAGTTAATTATTTGTGGTGACTTCAATCTTCCACGAGCCACATGGACGAAGGAAGGTTTTGCTACCTGCATCTCAACTAATAAATGCCCCAAGACACAGTCAATCTCAGATGGTATGTCACTGCATAATCTTATCCAACGTAACTTGATACCCAACAGTCGTGGCGTTCTGTTAGATTTAGTTTTTACTAACATTGCAAATGTGGATGACATGTCGATATCTGAGGCTATTGACCTGTTGTCAAATACATCGACCCATCATACTGCGTATTCAGTTAGTATTAAAGGCATTAGTTCTTCGCTGTCTATTCTTGAGGCTGATAATTATATCCTGCATTATAGATCAGCCGATTTTAACTTAATTAATAATTGCTTATTGGAGGCTGATTGGTCATTGCTATTTCACGGCAATGATATTGATTGCAATGTGGATCGCTTCTATCAGGTGTTGTGGTCCATCATCAATGACCATGTGCCACGCAAGAAAGTAGTGGTCTCGAAGTATCCCAAGTGGTTCTCTAGAGAATTGATTAGGTTAGTCACGTACAAGAAATATTTGCATAAACGATTTAAAGAAACCCGTCGTCTCGATTTTTACCAAAAGTTTTGCGAAACTCTTGATCAAGCTAAGAAGCTTAATTTAATCCTTCATCGTAGTTATATCGATAGGATAGAAGAAAAAATTATTGCTAATCCCCAGACCTTCTGGAGTTATTTTGATGACTGTAAGAAGGTCAAAGGATATCCAGCTCACATGTTCCTTGGCGACAAAACTTGTACATCTGGTCAAGAATGCGTGGATTTGTTTGCCAAGAAATTTTCTACTGTATATTGTAACACCAGCGGGGATGTTCATTTTGATCCAGTTAATCGAATCATCTGTGACAATCTGAATGTAACCCTTAGCGATGTTTTCGATGCTATTGGAGGTTTACCCGATAGTCTTAGTTCAGGACCTGATGTAAGATCTCAATTAGAATATGCATCATGCGTCTGGTCCCCGTTTTATCAGACCGACATTGACAGACTGGAAGCGGTTGAACTTAAGTTCCTTAAATATGTTCACTTTAAGTGGGGACGTACTCGGGAGGATTTCGACAGTTCAAGTTGCCTCGTTGCCTGTAACAACACCAAGTCGTTAGAATATAGGCGCAAAATCGCAGACTTATGTTTCACCTTTCGACTGTTGAATGGTAAAATAAACTGCCAACACTTGCTAAATTATTTCGTACCACATGTATCTTCACATGATACTAGGCACAAGTACGCCTTTGCCACAGGTATGCATTCAACAAATTATGGCTTTCATAGTCCGATACCCAGAATAATCCGGTTAGTCAACAAACTTCACGGACATGAACGGTTTAATATGCAGCGACAATCATTTGCTAGCTTCAAGAATAACATCATGTGGAAAATGGCGGTCTAG
Protein Sequence
MVSLLQGTLSNSNRHSKIKSEEIELNLDKLHHHLSHSRAEISVHFQKTKTDCNPLTTPQISNYKFKCEICDHQFTQKGNLKVHLRTHSGYKPFQCEICDYKCALKHHLERHLRTHSVDKPFQCEICDHKFAHRDSLKNHLRTHSGDKPFQCEICYYKCALKHHLEIHLRTHSGDKPFQCEICDYKCAHKSNLRDHLRTHSGDKPFQCEICDYKCAQKRYLKRHLRTHSGDKPFQCEVCDYKCARKGYLKVHLKTHSGDKPFQCEICDYKCAHRNSLKSHLKTHSGDKPFQCEICDYECTRKGSLESHLRTHLGDKPFQCEICDYKCANRSSLRYHLRTHSGDKPFQCEICDYKCAHRSSLKSHYNTIETVFVRIGNIILGAVYIPPDSNVQDYDDFCDIIDNIANHDPFSKLIICGDFNLPRATWTKEGFATCISTNKCPKTQSISDGMSLHNLIQRNLIPNSRGVLLDLVFTNIANVDDMSISEAIDLLSNTSTHHTAYSVSIKGISSSLSILEADNYILHYRSADFNLINNCLLEADWSLLFHGNDIDCNVDRFYQVLWSIINDHVPRKKVVVSKYPKWFSRELIRLVTYKKYLHKRFKETRRLDFYQKFCETLDQAKKLNLILHRSYIDRIEEKIIANPQTFWSYFDDCKKVKGYPAHMFLGDKTCTSGQECVDLFAKKFSTVYCNTSGDVHFDPVNRIICDNLNVTLSDVFDAIGGLPDSLSSGPDVRSQLEYASCVWSPFYQTDIDRLEAVELKFLKYVHFKWGRTREDFDSSSCLVACNNTKSLEYRRKIADLCFTFRLLNGKINCQHLLNYFVPHVSSHDTRHKYAFATGMHSTNYGFHSPIPRIIRLVNKLHGHERFNMQRQSFASFKNNIMWKMAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-