Rful004504.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:22141385-22142488[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0021 0.062 14.6 5.1 1 23 63 85 63 85 0.98 2 11 0.0011 0.032 15.5 2.8 1 23 91 113 91 113 0.97 3 11 6.4e-05 0.0018 19.4 0.7 1 23 119 141 119 141 0.97 4 11 0.00014 0.004 18.4 0.5 1 23 147 169 147 169 0.97 5 11 0.00014 0.004 18.4 0.5 1 23 175 197 175 197 0.97 6 11 0.0055 0.16 13.3 3.8 1 23 203 225 203 225 0.98 7 11 0.00016 0.0047 18.1 4.8 1 23 231 253 231 253 0.98 8 11 5.2e-06 0.00015 22.9 0.3 1 23 259 281 259 281 0.97 9 11 6.8e-05 0.002 19.3 0.4 3 23 289 309 287 309 0.97 10 11 2.3e-05 0.00066 20.8 1.4 3 23 317 337 317 337 0.99 11 11 2.1e-05 0.0006 21.0 2.0 1 23 343 365 343 365 0.97
Sequence Information
- Coding Sequence
- ATGGAACCGATCGACCAAGTACCGCAACCTCCATATAATTCTGATAGCTGTAAAATTGAAGTAGAAGACCTAGAAGATGTGAAGTTTAATTTGGAAGATTTACATCATTCGATAGATATCAAAGACGAGAGCGATGCAGAACAATTACCATTGGAGAAACCTGTAAGAAAAACTAAAAACTCAAATTTTAGTTGTCAGTTTTGTGACTTTAAAAGTGCACATAAATCAAGTTTAAAACAGCATTTAAAAACTCATACAGGCGAGAAACCTTTTGCTTGTGAGATTTGCGAATACAAAGGTACAAACAAACACCATTTAATTGATCATTTAAAAACTCACACAGGCGAAAAACCTTTTGCTTGTGAGATTTGTGACTATAAAAGTGCTCGAAAATCGCAATTAAAATATCATTTAAAAATTCACACAGGCGAGAAAGCTTTTGCTTGTGAGATTTGTGACTATAAGAGTGCTCGAAAATCGCTATTAAAATATCATTTAAAAATTCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAAAGTGCTCGAAAATCGCTATTAAAATATCATTTAAAAATTCACACAGGCGAGAAACCTTTTTCTTGCGAGATTTGTGAATTCAAAACTGCATACAAATCGCATTTTAAAGATCATTTAAAAAGTCATACAGGCGAGAAACCTTTTTCTTGTCAGATTTGTGACTATAAATGTGTTCGAAAATCATATTTAAATTATCATTTAAAAACTCATACAGTAAAAAAACCTTTTGCTTGTGAGATATGTGACTATACGAGTGCTTACAAATCAAACTTAAAAGTCCATATAAGAAGTCACACAGGCGAGAAACCTCTTGCTTGTGAGATTTGCGACTACACAAGTGCAAACAAACGCCAATTAAATAATCATTTAAAAACTCATACATTAAATAAACCTTTGGGCTGTGTGATTTGTGACTATACATGTGCTTACAAATCAAACTTAAAAGTTCATATAAGAACTCACACAGGTGAGAAACCTTTTGCTTGTGAGATTTGCGACTACACAAGTGCAAACAAACACCAATTAAATAAACATTTAAAAACTCACAGCAGATAA
- Protein Sequence
- MEPIDQVPQPPYNSDSCKIEVEDLEDVKFNLEDLHHSIDIKDESDAEQLPLEKPVRKTKNSNFSCQFCDFKSAHKSSLKQHLKTHTGEKPFACEICEYKGTNKHHLIDHLKTHTGEKPFACEICDYKSARKSQLKYHLKIHTGEKAFACEICDYKSARKSLLKYHLKIHTGEKPFACEICDYKSARKSLLKYHLKIHTGEKPFSCEICEFKTAYKSHFKDHLKSHTGEKPFSCQICDYKCVRKSYLNYHLKTHTVKKPFACEICDYTSAYKSNLKVHIRSHTGEKPLACEICDYTSANKRQLNNHLKTHTLNKPLGCVICDYTCAYKSNLKVHIRTHTGEKPFACEICDYTSANKHQLNKHLKTHSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -