Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:3273115-3280043[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0017 0.051 14.9 5.8 1 23 155 177 155 177 0.98

2 16 6.4e-05 0.0019 19.4 0.5 1 23 183 205 183 205 0.98

3 16 0.0071 0.21 13.0 1.3 1 23 211 233 211 233 0.94

4 16 0.00031 0.0089 17.3 5.3 1 23 239 261 239 261 0.98

5 16 0.00044 0.013 16.8 0.9 1 23 267 289 267 289 0.99

6 16 1.1 31 6.1 0.3 1 17 295 311 295 312 0.93

7 16 0.0066 0.19 13.1 4.0 1 23 323 345 323 345 0.98

8 16 0.03 0.87 11.0 3.1 1 23 351 373 351 373 0.99

9 16 0.0076 0.22 12.9 5.5 1 23 379 401 379 401 0.97

10 16 0.0016 0.045 15.1 1.4 1 23 407 429 407 429 0.97

11 16 0.0014 0.041 15.2 2.2 1 23 435 457 435 457 0.96

12 16 0.00027 0.0078 17.5 3.3 1 23 463 485 463 485 0.97

13 16 0.0017 0.048 15.0 1.8 1 23 491 513 491 513 0.98

14 16 0.00024 0.0068 17.6 4.2 1 23 519 541 519 541 0.98

15 16 0.0015 0.044 15.1 1.3 1 23 543 565 543 565 0.97

16 16 0.001 0.029 15.7 1.6 1 23 571 593 571 593 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0017	0.051	14.9	5.8	1	23	155	177	155	177	0.98
2	16	6.4e-05	0.0019	19.4	0.5	1	23	183	205	183	205	0.98
3	16	0.0071	0.21	13.0	1.3	1	23	211	233	211	233	0.94
4	16	0.00031	0.0089	17.3	5.3	1	23	239	261	239	261	0.98
5	16	0.00044	0.013	16.8	0.9	1	23	267	289	267	289	0.99
6	16	1.1	31	6.1	0.3	1	17	295	311	295	312	0.93
7	16	0.0066	0.19	13.1	4.0	1	23	323	345	323	345	0.98
8	16	0.03	0.87	11.0	3.1	1	23	351	373	351	373	0.99
9	16	0.0076	0.22	12.9	5.5	1	23	379	401	379	401	0.97
10	16	0.0016	0.045	15.1	1.4	1	23	407	429	407	429	0.97
11	16	0.0014	0.041	15.2	2.2	1	23	435	457	435	457	0.96
12	16	0.00027	0.0078	17.5	3.3	1	23	463	485	463	485	0.97
13	16	0.0017	0.048	15.0	1.8	1	23	491	513	491	513	0.98
14	16	0.00024	0.0068	17.6	4.2	1	23	519	541	519	541	0.98
15	16	0.0015	0.044	15.1	1.3	1	23	543	565	543	565	0.97
16	16	0.001	0.029	15.7	1.6	1	23	571	593	571	593	0.97

Sequence Information

Coding Sequence: ATGGAGAATATTTTGCTTTCAACCAAATTTGACGAAGCTATCAATGGTTTGGGGGCTTCCAGTATCAAAAACGAAATGATGGCCAAGGATGTCAAACTAGAAGAGGCCGAAGACCATCCAAATTTCGATTATCGACAGGATAATAATGAGGAATGCCCACGCCATTCGAATAACTACCCCGAGATTAAGACGGAAGAAGAATGGGAATTGCAGTTAGAAGGATTACATCATTCCATTGACATCAAAGAAGATGCTCCAATTCAGGAACGTCAACCGGAGAGAAAACACAATACAGATGGTACTCTGTGGTATTCAAAGAGCCCCTCCAAAATTAAGACAGAAGAAATAGAATTGAACTTGAAAAACATTCACGAAGACCGTTTCGTTCACCGCGAGGAAACAAAATCAACTGGCAAACCGCGTACGCGTGAAATTTTACAACATGACCCTGGTAAGGAACGGTTTATGTGTGAATTGTGCGACTACAAATCTGCAAGAAAGCATCATTTAAAAAGTCATTTAAAAACTCATACAACGGAGAAGCCGTTTATGTGTGAAATTTGTGACTACAAATCCGCACGAAAAGGAGACTTAACAAGTCATTTGAAAACTCATACAGGCGATAAAAAATTTTTGTGTGCACTTTGCGACTTCAAATCTGTGCACAAGGAAAATTTAAAAAGGCATTTAATTATTCATACCGGCGAGAAACCGCATACGTGTGAAATTTGCGAGTATAGATGTAAACAGAAGGGGCAATTAAAACGTCACTTAAAAATTCACACTGGGGAGAAACCGTTTAAGTGTGCCATTTGTAATTATAGATCTGCATATAAGGTGGATTTAAATAACCATTTAAGAAAACATCGAGGCGAGAAACCGTTTCAGTGTGCAATTTGCGACTACAAAACTGAACAAAAGAGATATTTACAGCTTTATTTAAAAACTCATACCGGTGAGAAACAATTTACTTGTGAGATTTGTGGTTTCCAATCCATACATAAACACAGTTTAAAAACTCATTTAAAAGGTCATTCGGGCGAAAAACCGTTTCAGTGTACAATTTGTGATTTCAAATCGGCACATGTAGGCAGTTTCAAGTATCACTTGAAAACTCATACGACCGAGAGACCGTTCGCATGTGAGTTTTGTGACTACAAATGTGCGCATAAGGAAAGTTTAAAGTATCATTTAAAAACTCATTCAGGAGAGAAACCGTTTATTTGTGTAATTTGTGATTACAAATGCGTATTGAAGGGAAGTTTAAAACGTCACATAACAACTCACACTGGCGAAAAACCATTTTTGTGTGACATTTGTGACTTCAAATGTACACGGAAGGGAGATTTAGGAAATCATTTAAAAACTCATACAGGCGAGTCGCCGTTTAATTGCGAAATCTGCGGTTTTAAATGTGCACGGAAGGACAATTTAAAGTATCATCTAAAAAATCATACGGGCGAGAAAGAGTTCACTTGTTCAATTTGTGACCAAAAATTTTCACATAAAGGAATTTTAAAAGGTCACTTAAAAATACATACGGGCGAGAAACCGTTCCATTGTGAAATTTGCGGTTATAGAAGTGCACGAAGCCATAATTTAAAACTTCATTTAAAAACTCACACTTTTGCTTGTGAAATTTGTGATCAGAAATGTGTGAATAGGCAGACATTGAAAGGTCATTTAATGACTCATTCGGGCGAGGAACTTTTTGCGTGCTCGACTTGTGAGTACAAAAGTGTACGGAGAAATAATTTAAGAATGCATTTAAGGACTCATGCCAGCGAGAAAACCGTTAAAGTGTAA
Protein Sequence: MENILLSTKFDEAINGLGASSIKNEMMAKDVKLEEAEDHPNFDYRQDNNEECPRHSNNYPEIKTEEEWELQLEGLHHSIDIKEDAPIQERQPERKHNTDGTLWYSKSPSKIKTEEIELNLKNIHEDRFVHREETKSTGKPRTREILQHDPGKERFMCELCDYKSARKHHLKSHLKTHTTEKPFMCEICDYKSARKGDLTSHLKTHTGDKKFLCALCDFKSVHKENLKRHLIIHTGEKPHTCEICEYRCKQKGQLKRHLKIHTGEKPFKCAICNYRSAYKVDLNNHLRKHRGEKPFQCAICDYKTEQKRYLQLYLKTHTGEKQFTCEICGFQSIHKHSLKTHLKGHSGEKPFQCTICDFKSAHVGSFKYHLKTHTTERPFACEFCDYKCAHKESLKYHLKTHSGEKPFICVICDYKCVLKGSLKRHITTHTGEKPFLCDICDFKCTRKGDLGNHLKTHTGESPFNCEICGFKCARKDNLKYHLKNHTGEKEFTCSICDQKFSHKGILKGHLKIHTGEKPFHCEICGYRSARSHNLKLHLKTHTFACEICDQKCVNRQTLKGHLMTHSGEELFACSTCEYKSVRRNNLRMHLRTHASEKTVKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -