Rful010777.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:23473304-23475411[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.63 18 6.8 0.8 1 23 79 101 79 101 0.96
2 16 9.3e-05 0.0027 18.9 0.5 1 23 107 129 107 129 0.97
3 16 0.0031 0.091 14.1 3.4 3 23 165 185 163 185 0.98
4 16 0.0027 0.077 14.3 6.4 1 23 191 213 191 213 0.98
5 16 0.00012 0.0034 18.6 2.8 1 23 219 241 219 241 0.97
6 16 6.5e-05 0.0019 19.4 4.1 1 23 247 269 247 269 0.98
7 16 0.00026 0.0075 17.5 0.9 1 23 275 297 275 297 0.97
8 16 0.014 0.42 12.0 3.9 1 23 301 323 301 323 0.98
9 16 0.002 0.059 14.7 2.1 1 21 329 349 329 351 0.96
10 16 0.014 0.41 12.0 5.3 1 23 357 379 357 379 0.96
11 16 0.76 22 6.6 2.3 2 23 389 411 388 411 0.95
12 16 0.0027 0.078 14.3 7.9 1 23 417 439 417 439 0.98
13 16 0.0014 0.041 15.2 4.6 2 23 446 467 445 467 0.97
14 16 0.00019 0.0055 17.9 5.6 1 23 473 495 473 495 0.97
15 16 1.6e-05 0.00046 21.3 2.4 2 23 502 523 501 523 0.96
16 16 2.6e-05 0.00074 20.7 3.7 2 23 530 551 529 551 0.97

Sequence Information

Coding Sequence
ATGGAACTTGACACCGATACTCCTAAAGTGCTACTCTCTGAAAAGCTTCAAATTTTGGAAAGCATTGGAAACGTGGTGGAATCACCATATAATCCAATTGCAGATTTCGAAATTAAAACAGAAGAATTGGAAGATGTCAAATTTGATTTAGAAGATCTGCATAATTCAATTGATATTAAAGAAGAAGACGAAATCGAACAATTAACGGAGAGGCAGCCTTCGAGAAAAAATTTATTCGAGTGTATGTTTTGTGAGTATAAAGATAATACTAAAAGCGGATTAAAACTGCATTTAATAACTCATACTGAAGTAAAATTGTTTGCTTGTGATATTTGTGACTATAAATCGACTCAAAATGGACAATTAAAAAAGCATGTAAAAATCCACTCCGATAAGAAATTGTTTAAATGTGAATTTTGTATCTATCAGTGTGTACACTATTCAAAGTTAAAAAGACATTTAAAATTTCATACTGGCGATAAACCTTTTGGCTGTACACTTTGTGACTATAAGTGCTCCCAAAAACCACATTTAGCAGTACATTTAAAAACTCACACCGGGGAAAAACCATTTAGTTGTAAAGATTGTGGGTATAAATGTTTAAGAAAGTCCCATTTAATAACGCATTTAAAAACTCACACCGGTGAGAAGCCGTTTGCTTGTGCACTTTGCGACTATAAATGTACACAAAATTCAACTTTGACAAAGCATGTAAGAACTCACACTGGAGAGAAACCGTTTACATGTGATATCTGTGAATATAAATGTTCCCAAAATTCAAGTTTAAAACGACATTTAACAACTCACTTCAACGAAAAACCGTTCGCTTGCGAAATTTGTGACTATAAATGTGCGGTTAAATCAAGTTTAAAACTGCATATGGTTACTCATAATGGCCCGTTTACTTGTGAAACCTGCGGATATAAATGTGCTCATATAATAAGTTTTAATAGACATTTAAGATGGCACACTGAAAAGAAACAATATACTTGCGACATTTGTGAGTACACAAGTACACAAATAGGTAATTTAAAACGCCATTTAAGATGTCACACCGGTGAGAAGCCATTTTCGTGTGAAAAGTGTGATTTTAAATGTGCAGAAAAGTCGCACTTAAAAAGGCATTTTGCAATCCACACAGGTGAGATACCGTTGACTTCTCTTACATGCGAAATTTGCGGAATTCAGTGTGAAGAAGAATCGCAGATAAAAACTCATTATTTAAAATGTCACACCGGAAAAAAACTGTTCACTTGTGAAATTTGTGGCCATCAGTGTGCTCAACATGCTCATTTAAAAAGGCATTTAAAATCCCACACCGGGGAGAAACCCGTATCTTGTGAAATGTGTCATTACAAATGTGCAGAAAAATCGGATTTGAAAAGACATTTAAAAACGCACACCGGCGAGAAACCGTTCGCCTGTGAAAAATGTGACTATAAATGTGCACAGAAATCACATTTAAATACTCATTTAAAAACTCACACCGGTAAAAAGCCGCTTTCCTGCAAAATTTGTGATTATCGCTGTATACAACAGTCAAATTTAAACAGGCACTTAAAAATTCACACCGGCGAAAAAGTGTTGACTTGTAAAATATGCGACTATAAATGTGCAAAAAAGTCTGATTTAAAAAGGCATATAAAAACTCACACCAGCAGGAAACCGTGTTTTAATTTTGTGAGTGTAGATGTACACGAAAACCAGGTTTAA
Protein Sequence
MELDTDTPKVLLSEKLQILESIGNVVESPYNPIADFEIKTEELEDVKFDLEDLHNSIDIKEEDEIEQLTERQPSRKNLFECMFCEYKDNTKSGLKLHLITHTEVKLFACDICDYKSTQNGQLKKHVKIHSDKKLFKCEFCIYQCVHYSKLKRHLKFHTGDKPFGCTLCDYKCSQKPHLAVHLKTHTGEKPFSCKDCGYKCLRKSHLITHLKTHTGEKPFACALCDYKCTQNSTLTKHVRTHTGEKPFTCDICEYKCSQNSSLKRHLTTHFNEKPFACEICDYKCAVKSSLKLHMVTHNGPFTCETCGYKCAHIISFNRHLRWHTEKKQYTCDICEYTSTQIGNLKRHLRCHTGEKPFSCEKCDFKCAEKSHLKRHFAIHTGEIPLTSLTCEICGIQCEEESQIKTHYLKCHTGKKLFTCEICGHQCAQHAHLKRHLKSHTGEKPVSCEMCHYKCAEKSDLKRHLKTHTGEKPFACEKCDYKCAQKSHLNTHLKTHTGKKPLSCKICDYRCIQQSNLNRHLKIHTGEKVLTCKICDYKCAKKSDLKRHIKTHTSRKPCFNFVSVDVHENQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-