Rful005962.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:3365170-3366219[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.4 1.9e+02 3.7 0.0 5 23 48 66 46 66 0.90 2 11 3.4e-05 0.00099 20.3 0.1 1 20 78 97 78 98 0.96 3 11 6.6e-05 0.0019 19.4 1.7 1 23 102 124 102 124 0.99 4 11 2.3e-05 0.00066 20.8 2.0 1 23 130 152 130 152 0.98 5 11 0.00091 0.026 15.8 3.7 1 23 158 180 158 180 0.96 6 11 0.00028 0.0082 17.4 0.7 1 23 186 208 186 208 0.98 7 11 0.00019 0.0054 18.0 2.2 1 23 214 236 214 236 0.99 8 11 1.5e-05 0.00044 21.4 4.9 1 23 242 264 242 264 0.98 9 11 6.3e-06 0.00018 22.6 0.9 1 23 270 292 270 292 0.98 10 11 0.00018 0.0052 18.0 2.1 3 23 300 320 298 320 0.98 11 11 4.7e-06 0.00014 23.0 2.9 1 23 326 348 326 348 0.97
Sequence Information
- Coding Sequence
- ATGGTAAGTTGGTTACAGGAAACGCCGTGCCATTCAAATAGCAGTCACCAAATCAAGAAGGAAGATGAAATGGAATTCAAGTTGGAAAATCTGCATCATTCCATTGACATCAAAGAGGAGATTTCTGTTCAACCAGAGGGAGAATGTAAGAAGCCGTTTAAACAAGATGGAATTGTAGAGCTTCATTTAAAAACTCATACCGATGAAAAACCATTTTCTTCCTTAAAATCGTTTAGGTGTGAAATTTGTGGGTATGAATTTGCACGTAAGGACAGTTTAAAAATTCATACCGGAGAAAAACCATTTAAGTGTGGAATTTGTGACTTTAAATGTGCAGATAAAGGGTATTTAAAAATTCATGTAAGAACCCATACCGGCGAGAAACCGTTTATTTGTAAAATTTGTGACTATAAATGTGCCCAAAAAGGAACTTTAACAATTCATTTGAGAACCCACACCGGCGATAAGCCGTTTTTATGTGACATGTGCGACTGTAAATGTGCCCGAAAGGGAGATTTGATTACTCACCTAAGAACCCATACAGGAGAGAAACCGTTTAAGTGTGACCTTTGTGACTACACGTGCGCACGTCGAGGAGATTTGGGCATCCATTTAAAAATTCATACCGGAGAAAAACCATTCAAATGCGATTTTTGCGACTATAACAGTGCACATAAAGGAAGCTTGAACATTCATTTGAGAACTCATACAGGCGAAAAACCGTTTAACTGTGAAATTTGTGGTCATAAATTTGCACATAAAAATAGCTTGAAAAGTCACTTAAGAACTCACACTGGTGAGAAACCGTTTGCATGTGAAATTTGTAATTTTAGTTTTGGGGATCGAAGAAATTTAAAAATGCATTTAAGAACTCATTCCGGCGAAAAGCCGTTTGGATGTGAATTGTGTGGCTATAAATGTGCAACAAAAGGAAATTTTAATAGTCATCTAAGAACTCATGCCGGCGAAAAACCATTTTTTTGTGATATTTGTGATTATAAATGTGCAAATAAAGGAAATTTAAACCGTCATTTAAGAACCCATACTTAA
- Protein Sequence
- MVSWLQETPCHSNSSHQIKKEDEMEFKLENLHHSIDIKEEISVQPEGECKKPFKQDGIVELHLKTHTDEKPFSSLKSFRCEICGYEFARKDSLKIHTGEKPFKCGICDFKCADKGYLKIHVRTHTGEKPFICKICDYKCAQKGTLTIHLRTHTGDKPFLCDMCDCKCARKGDLITHLRTHTGEKPFKCDLCDYTCARRGDLGIHLKIHTGEKPFKCDFCDYNSAHKGSLNIHLRTHTGEKPFNCEICGHKFAHKNSLKSHLRTHTGEKPFACEICNFSFGDRRNLKMHLRTHSGEKPFGCELCGYKCATKGNFNSHLRTHAGEKPFFCDICDYKCANKGNLNRHLRTHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -