Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996555.1:87007150-87009002[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.26 7.4 8.1 0.4 1 22 227 248 227 248 0.96

2 11 5.4e-05 0.0016 19.7 1.3 1 23 257 279 257 279 0.98

3 11 3.6e-05 0.0011 20.2 2.9 1 23 285 307 285 307 0.98

4 11 0.00011 0.003 18.7 0.5 1 23 313 335 313 335 0.95

5 11 0.0015 0.045 15.1 5.2 1 23 341 363 341 363 0.97

6 11 0.0029 0.083 14.2 3.1 2 23 371 392 370 392 0.97

7 11 4.9e-06 0.00014 22.9 2.8 3 23 412 432 410 432 0.97

8 11 6.5e-06 0.00019 22.6 0.3 1 23 438 460 438 460 0.97

9 11 8.8e-06 0.00025 22.1 5.7 1 23 466 488 466 488 0.98

10 11 2.3e-06 6.7e-05 24.0 1.4 1 23 494 516 494 516 0.99

11 11 3.3e-05 0.00095 20.3 2.7 1 23 522 544 522 544 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.26	7.4	8.1	0.4	1	22	227	248	227	248	0.96
2	11	5.4e-05	0.0016	19.7	1.3	1	23	257	279	257	279	0.98
3	11	3.6e-05	0.0011	20.2	2.9	1	23	285	307	285	307	0.98
4	11	0.00011	0.003	18.7	0.5	1	23	313	335	313	335	0.95
5	11	0.0015	0.045	15.1	5.2	1	23	341	363	341	363	0.97
6	11	0.0029	0.083	14.2	3.1	2	23	371	392	370	392	0.97
7	11	4.9e-06	0.00014	22.9	2.8	3	23	412	432	410	432	0.97
8	11	6.5e-06	0.00019	22.6	0.3	1	23	438	460	438	460	0.97
9	11	8.8e-06	0.00025	22.1	5.7	1	23	466	488	466	488	0.98
10	11	2.3e-06	6.7e-05	24.0	1.4	1	23	494	516	494	516	0.99
11	11	3.3e-05	0.00095	20.3	2.7	1	23	522	544	522	544	0.99

Sequence Information

Coding Sequence: ATGGAAGAATTACAAATTTTTAACACAAATATTGACTCTATTAAATTAACTAAAAGCAATTTAAGTTGTTCATGTCGTTTGTGTTTGACAGAAAATAATGTTCAACCTTTGTTTAAATTATGTTTCGATGGCTTATCGATGTCCAATATTTACATCGAGTTAACTTCTTTGCAGATTAAGGCGGATGACAATTTGCCTCAACATATATGTGTTCGCTGCATTGAAAAGTTGGTAACGAGTTATGAATTTATTCGCAAGTGTCAAAAAATTGATGAATTATTGCATTCCTTTCTTGATGAAAAACAAGAAGAAATAAATCAAGATATCGTAGACAATAAAAGTCTTGCAGTTTTACAAAACCAGAATACAGAAGAAAATCTTGAAATTCAAGATAAAAAGATAAAGGATTGTAATAATTCAAAAGAAGGAAATTTAGATAAGAATGTAACAGAAAATTGTCAAATCGAGTTTAATGAAGTAGACAATACTTTGGTCAAGTATGAAATTCTAACTGAAGACTATGATAATAACGAAGAACAATTTGAAACTGATAATATAATCATCGAGTTATGCCAAGAAGTAGAAGAAGATTTTCTCGATAGCAATAATGTTAAAGAAAATCAAAGTGAAAGTATACCAAAATTTGATTCAAATTCACCGGAACTTGTTGGAGCTCCATACAAATGTTCTAGATGCGAAAATTCTTATGATTCTCTAGTAGAGTTCAACGAACATTGGAGAAAAAGTTACAAATGTAAACCGTTTAAATATTCCTGTAAGAACTGCGGTAAAAAATTTAAAGAAACAGCGAAGCTGAAAGTACACGAAAGAATTCATACGAATGAAAAACCATACGAATGTGATATATGCAATAAGAAATTTAGTATCTGTCAAAATTTGGAACGGCACAAAAGGATTCATACTGGAGAAAAACCTTTTTTGTGTGAAATTTGTGGAAAACGTTTCACGCGTTTGATAACCAAAGAAGAACACATGAGAATTCATTCGGGGGATAAACCACACAACTGTCAAATTTGCAGTAAAAATTTTTTCCGTTCTAGAGATTTTACCATGCACATGAGGAACCATGAATGTGATGGTAAAACAATGAAGTGCCCTCATTGTTCTAAAACTTATGTTACACTTAAAATGTTTAGTTTGCACCTGAAGAGTCACTTGTTAAACAAACCAAAGCAGCAAAAGAGCGAGGAGGACGTCAAAAATATATGTTTGTGTAACTTATGTGGCAAAACGTTTTCGACCTCAGGAAATTTAAAAACTCATTTGTCTATGCATTCGGGTAGTTTGCAGTATGCTTGTGCAATATGCAACAAACGATTTAGTTACAAAAGCAGTTTAGCCAAACATGTTTTGATTCACACCGGGGAAAGACCGTACTCTTGTAGTTATTGCCACAAGAGATTTGTGCAAAGTGTTCACTTAAGGCAACATCTCAGGGTGCACACGGGTGAAAGACCATATACTTGCGACGTTTGTGGGAAAAGTTTTTCTTTAAGTTGCAATTTAATTGTTCATAGGCGTGTGCATACTGGAGAAACGCCATATAAATGTATGTTTTGTGATAAAGGGTTTTATGACTCAAGTTCCATGAAGAAACATCAAAAAGTTCATGGCTTGGATAAAACACAAATACAAAGTGAATACACTGTATGA
Protein Sequence: MEELQIFNTNIDSIKLTKSNLSCSCRLCLTENNVQPLFKLCFDGLSMSNIYIELTSLQIKADDNLPQHICVRCIEKLVTSYEFIRKCQKIDELLHSFLDEKQEEINQDIVDNKSLAVLQNQNTEENLEIQDKKIKDCNNSKEGNLDKNVTENCQIEFNEVDNTLVKYEILTEDYDNNEEQFETDNIIIELCQEVEEDFLDSNNVKENQSESIPKFDSNSPELVGAPYKCSRCENSYDSLVEFNEHWRKSYKCKPFKYSCKNCGKKFKETAKLKVHERIHTNEKPYECDICNKKFSICQNLERHKRIHTGEKPFLCEICGKRFTRLITKEEHMRIHSGDKPHNCQICSKNFFRSRDFTMHMRNHECDGKTMKCPHCSKTYVTLKMFSLHLKSHLLNKPKQQKSEEDVKNICLCNLCGKTFSTSGNLKTHLSMHSGSLQYACAICNKRFSYKSSLAKHVLIHTGERPYSCSYCHKRFVQSVHLRQHLRVHTGERPYTCDVCGKSFSLSCNLIVHRRVHTGETPYKCMFCDKGFYDSSSMKKHQKVHGLDKTQIQSEYTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01294117;
90% Identity: -
80% Identity: -