Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:2618615-2626106[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.1e-05 0.0023 19.1 0.2 1 23 55 77 55 77 0.98

2 14 0.76 22 6.6 0.6 1 23 83 105 83 105 0.94

3 14 8.7e-05 0.0025 19.0 1.8 1 23 111 133 111 133 0.99

4 14 0.0002 0.0058 17.9 2.8 1 23 139 161 139 161 0.98

5 14 0.0019 0.054 14.8 4.9 1 23 167 189 167 189 0.98

6 14 0.013 0.38 12.1 5.5 1 23 241 263 241 263 0.98

7 14 0.00033 0.0095 17.2 1.0 3 23 271 291 269 291 0.98

8 14 4e-05 0.0012 20.1 0.6 1 23 297 319 297 319 0.99

9 14 3.4e-05 0.00097 20.3 4.5 1 23 325 347 325 347 0.99

10 14 8.4e-06 0.00024 22.2 5.0 1 23 353 375 353 375 0.98

11 14 0.0011 0.031 15.5 3.6 1 23 381 403 381 403 0.97

12 14 3.1e-05 0.00089 20.4 1.3 1 23 409 431 409 431 0.98

13 14 0.0073 0.21 13.0 1.2 1 23 437 459 437 459 0.98

14 14 0.0066 0.19 13.1 1.8 1 23 465 487 465 487 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.1e-05	0.0023	19.1	0.2	1	23	55	77	55	77	0.98
2	14	0.76	22	6.6	0.6	1	23	83	105	83	105	0.94
3	14	8.7e-05	0.0025	19.0	1.8	1	23	111	133	111	133	0.99
4	14	0.0002	0.0058	17.9	2.8	1	23	139	161	139	161	0.98
5	14	0.0019	0.054	14.8	4.9	1	23	167	189	167	189	0.98
6	14	0.013	0.38	12.1	5.5	1	23	241	263	241	263	0.98
7	14	0.00033	0.0095	17.2	1.0	3	23	271	291	269	291	0.98
8	14	4e-05	0.0012	20.1	0.6	1	23	297	319	297	319	0.99
9	14	3.4e-05	0.00097	20.3	4.5	1	23	325	347	325	347	0.99
10	14	8.4e-06	0.00024	22.2	5.0	1	23	353	375	353	375	0.98
11	14	0.0011	0.031	15.5	3.6	1	23	381	403	381	403	0.97
12	14	3.1e-05	0.00089	20.4	1.3	1	23	409	431	409	431	0.98
13	14	0.0073	0.21	13.0	1.2	1	23	437	459	437	459	0.98
14	14	0.0066	0.19	13.1	1.8	1	23	465	487	465	487	0.99

Sequence Information

Coding Sequence: ATGGAAACTCCAAGGAGCTCCTCTCAAATTAAGACGGAACAAGAAGAAATAGAACTCAAATTGGAAGATTTGCATCACTCAATTGATATTAAAGATGAGCCCTCGTTTATAGAACCTGAAACGGATGCACAGTGCAAACGAGAAGCAGGAAGTCAGAAACCGTTTAAGTGTGAAATTTGTGGAAATAAATACGTCAGTAAAGGAACTTTAAAAATACATTTATTAGTTCACACTGGTCAAAAATCATTTGCGTGTGACATTTGTGACTACAAAAGTCTACGTCAGAGAGATTTAAATTTCCATTTGAGAATTCATACAGGCGATAAACCGTACAAGTGTGAAATTTGTGACTGTAGATATGCAAGAAAAGGAGTTTTAAAAGTGCACTTGAAAACCCACACAGGCGAGAAACCTTTTGTGTGCGATATTTGTGACTATAAATGTGCACAACGATCACATTTAGACAGGCATTTAATATCCCATACTGGTGAAAAGAGCTTTACGTGTCAAATTTGTGACTTTAAGTGTGCACAAAAAGGGCATTTAAAAAGTCATGTTACAACTCACACAGAAAAAGAAGAAGAATTGGAATTTAAGTTGGAAGATTTGCATCACACAATCGACATTAAAGAAGATCCAAACTTTCAGGAGATCCCAGCGTTGGAAATAAGCACGGAATCGTTGAAGAGTGAAATTTGTGAGAAAAATGAAGAGAAACTTTTTAGCTGCAAAATTTGTCACTATAAATGTTTACGTCAAGGAAGTTTAAATATCCATTTAAGGACTCATACTGGCGAGAAACCTTTTGGGTGTGAAATCTGCGACTACAGATGTACCAATAAAGCAGGATTAACTATGCATTTAAGAATTCACACGGGGGAGAAGCCTTTTACATGTGAAATTTGTGATTTTAAAAGTGCACGTAACGCAGGTTTAAAAAAGCATTTAAGAACTCATACGGGGGAGAAACCGTTCAGATGTGAACTGTGCGATTACACATGTGCACATAAAGCAAATTTAAATACTCATTTAAGAACTCATACCGGTGAGAAGCCCTTTATGTGTGAAATTTGTGGTCACATGTTTACCCAAAAGGAACATTTTAATAGTCATTTAAGAACGCATACAGGGGAGAAGCCTTTTGCGTGCGAAATTTGTAACTACAAGTGTGCGCATAGAGATTATTTGAATTTACACTTACGATCTCATACAGGCGATAGACCGTTTACTTGTGCGACTTGTGGTTATAAATCTGCACGTAAGGAAAATTTAAAAAATCACTTGAAAACTCACTCGGATGTAAAACCGTTCACGTGTGTCATTTGTGGGTATAAGTGTACTGGAAAAATACGTTTGAACATTCATTTAAAAATCCATACCGGGGAAAAACCGTATACATGTGCAATTTGTGATTATAAGTCTGCGGAAAAAAGATGTTTAAATATTCATTTAAAAACTCACACCAGAAAGAAAAAATAA
Protein Sequence: METPRSSSQIKTEQEEIELKLEDLHHSIDIKDEPSFIEPETDAQCKREAGSQKPFKCEICGNKYVSKGTLKIHLLVHTGQKSFACDICDYKSLRQRDLNFHLRIHTGDKPYKCEICDCRYARKGVLKVHLKTHTGEKPFVCDICDYKCAQRSHLDRHLISHTGEKSFTCQICDFKCAQKGHLKSHVTTHTEKEEELEFKLEDLHHTIDIKEDPNFQEIPALEISTESLKSEICEKNEEKLFSCKICHYKCLRQGSLNIHLRTHTGEKPFGCEICDYRCTNKAGLTMHLRIHTGEKPFTCEICDFKSARNAGLKKHLRTHTGEKPFRCELCDYTCAHKANLNTHLRTHTGEKPFMCEICGHMFTQKEHFNSHLRTHTGEKPFACEICNYKCAHRDYLNLHLRSHTGDRPFTCATCGYKSARKENLKNHLKTHSDVKPFTCVICGYKCTGKIRLNIHLKIHTGEKPYTCAICDYKSAEKRCLNIHLKTHTRKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -