Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996559.1:27041860-27046124[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00011 0.0032 18.7 1.1 1 23 272 294 272 294 0.98

2 12 8.4e-05 0.0024 19.1 0.3 1 23 300 322 300 322 0.98

3 12 0.00032 0.0093 17.2 5.2 1 23 328 350 328 350 0.99

4 12 3.8e-07 1.1e-05 26.4 3.7 1 23 356 378 356 378 0.99

5 12 5.9e-05 0.0017 19.5 3.4 1 23 384 406 384 406 0.98

6 12 0.0014 0.04 15.2 4.9 1 23 411 433 411 433 0.99

7 12 0.00057 0.016 16.4 4.0 1 23 439 461 439 461 0.98

8 12 0.0016 0.046 15.0 3.0 1 23 467 489 467 489 0.99

9 12 4.3e-05 0.0012 20.0 1.0 1 23 495 517 495 517 0.99

10 12 5.9e-05 0.0017 19.5 3.4 1 23 523 545 523 545 0.98

11 12 0.0079 0.23 12.8 3.7 1 23 551 573 551 573 0.98

12 12 6e-06 0.00017 22.7 1.2 1 23 579 601 579 601 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00011	0.0032	18.7	1.1	1	23	272	294	272	294	0.98
2	12	8.4e-05	0.0024	19.1	0.3	1	23	300	322	300	322	0.98
3	12	0.00032	0.0093	17.2	5.2	1	23	328	350	328	350	0.99
4	12	3.8e-07	1.1e-05	26.4	3.7	1	23	356	378	356	378	0.99
5	12	5.9e-05	0.0017	19.5	3.4	1	23	384	406	384	406	0.98
6	12	0.0014	0.04	15.2	4.9	1	23	411	433	411	433	0.99
7	12	0.00057	0.016	16.4	4.0	1	23	439	461	439	461	0.98
8	12	0.0016	0.046	15.0	3.0	1	23	467	489	467	489	0.99
9	12	4.3e-05	0.0012	20.0	1.0	1	23	495	517	495	517	0.99
10	12	5.9e-05	0.0017	19.5	3.4	1	23	523	545	523	545	0.98
11	12	0.0079	0.23	12.8	3.7	1	23	551	573	551	573	0.98
12	12	6e-06	0.00017	22.7	1.2	1	23	579	601	579	601	0.98

Sequence Information

Coding Sequence: ATGGACGATACTTTTGAAAAGTTAAGTAAAACCAATTATAGACAATGGTCGATACAAATGAGAAAAGTGTTGGAATTGCAAGATTGCCTGGATGCGATCGAGTTCAACAAAGCTATGTTAACAAGCGAACAAAAGCAAAAAGATGAGAAATGTAAGTCGTTGCTTCTTCTCGGTGTAGACAGGGACAACTTAGACACCATCGAAGAGTGTACAACGGCAAACGAAATCTGGAATAAATTAAAGGAGATTCACACGAAATTCGATAATTATTATCAGGGTGTACTTTTGTTAAAAGAATTTGTAAATATGGAGAAAAGTCAAAACGAAGATATTATGGAATATTTGAATCGAAGAAAAAACCTGTACGAGAAGGTACAGGACGTCGGAATTAGTTTCGAAAACAAAGTGTTGATGGGATTAGTGTTAATGGGGCTGCCAAATGAGTACGAAGATCTAAGGAGAACTGTAGAAATTGATGATGACAGATTAACCTTGGGTAGCTTAGAAATTAGATTAACCGAAGAAGAGAGACGTCTGAAGGGCAATGATGCCACTGTAACCAAGCAACCGTCATCCCCAGAAGTAACAAAATCCAATGAAACGCTGCACTGCGATCAAATTAAAACAGAAGAATTAGAATTCAACTTGGAAGATCTGCATCATACCATTGATATTAAAGAAGAGACTTCACCCTTCGTTCTGGATAGAGAATGCAAACCTGAAACAAACGAAAAACTTAAATGTGATAATTATGAAGTTGAAAGTAAGGAAAGTTTAAAAAATTATTCTAACGCTTCTCTGACCGAAAAACCATTTATGTGTGTTATTTGTAACTATAAATGTGCATATAAGGGTAATTTAATAATCCACATAAGAACGCATACCGGTGAAAGGCCATTTACGTGTAAAATTTGCGGTAATAATTTTGCAAATAGTGCATATTTAAAAGGTCATTTAAAAATTCATAGTGGGGAGAAACCATATCAGTGTAATATTTGTCAGTACAAATGTATAACAAAAGCAAAGTTACAAAGACATTTCAGAACGCATACCGGGGAGAGGCCTTTTAAGTGTAATATTTGTGATTACACTTTTAAACATAAATCAGGGTTAACGATACATTTAAGAACTCATACAGGCGAGAAGCCGTTTACATGTGAGCTTTGCGACTACAAATGCACACAAAAAGTAAGTTTACAAAAACATTTAAGAGTACATACCGGCGAAAAGTTTACATGTAAAATTTGTGGGCAAAAATATTCAGAAAAGTGTAAGCTAACAATTCACTTTAGAACCCATTCTGGTGAGAGACCGTTCACGTGTAAAATTTGTGGATGTAAATATGCAAATAGAGCATGTTTAAAAGTTCATTTAAAAATCCATAGTGGCGAAAAGCCGTATCAGTGTAATATTTGCGAATATAAATGCATCGCAAAAGCAACTTTACAAAGACATTTCAGGACTCATACTGGGGAAAAGCCATTTAAGTGTGAAATTTGCGATTATACCTCGATACATAAAGCAGGGTTAACAATACATTTAAGAACTCATACTGGCGAGAAGCCGTTTACATGTGAGCTTTGCGACTACAAATGTACACAAAAAGTGAGTTTGCAGAAACATTTAAGAGTACATACTGGGGAGAAACCGTTTACATGTAAAATTTGTAATAATAAATTTTCATGTAAAGGAAGTTTACAAATGCATTTAAGAATTCATACAGGCGAGAAGCCCTTTTCGTGTGAAATTTGCGGCTATAAATGTGCACAAAGGGGAAATTTAAAAATTCATATAAGGAGTCATAAAGTTGTAGTATAA
Protein Sequence: MDDTFEKLSKTNYRQWSIQMRKVLELQDCLDAIEFNKAMLTSEQKQKDEKCKSLLLLGVDRDNLDTIEECTTANEIWNKLKEIHTKFDNYYQGVLLLKEFVNMEKSQNEDIMEYLNRRKNLYEKVQDVGISFENKVLMGLVLMGLPNEYEDLRRTVEIDDDRLTLGSLEIRLTEEERRLKGNDATVTKQPSSPEVTKSNETLHCDQIKTEELEFNLEDLHHTIDIKEETSPFVLDRECKPETNEKLKCDNYEVESKESLKNYSNASLTEKPFMCVICNYKCAYKGNLIIHIRTHTGERPFTCKICGNNFANSAYLKGHLKIHSGEKPYQCNICQYKCITKAKLQRHFRTHTGERPFKCNICDYTFKHKSGLTIHLRTHTGEKPFTCELCDYKCTQKVSLQKHLRVHTGEKFTCKICGQKYSEKCKLTIHFRTHSGERPFTCKICGCKYANRACLKVHLKIHSGEKPYQCNICEYKCIAKATLQRHFRTHTGEKPFKCEICDYTSIHKAGLTIHLRTHTGEKPFTCELCDYKCTQKVSLQKHLRVHTGEKPFTCKICNNKFSCKGSLQMHLRIHTGEKPFSCEICGYKCAQRGNLKIHIRSHKVVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -