Rful011635.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:6256390-6257646[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00014 0.004 18.4 2.7 1 23 58 80 58 80 0.98 2 13 5.8e-06 0.00017 22.7 1.2 1 23 86 108 86 108 0.99 3 13 0.08 2.3 9.7 9.8 1 23 114 136 114 136 0.98 4 13 1.9e-05 0.00054 21.1 5.9 2 23 143 164 142 164 0.97 5 13 0.0094 0.27 12.6 8.2 1 23 170 192 170 192 0.96 6 13 0.00011 0.0032 18.7 2.7 3 23 200 220 198 220 0.98 7 13 7.3e-05 0.0021 19.2 1.3 2 23 227 248 226 248 0.97 8 13 0.00014 0.0039 18.4 1.9 1 23 254 276 254 276 0.98 9 13 0.0048 0.14 13.5 1.3 2 23 283 304 282 304 0.97 10 13 1.8e-05 0.00052 21.2 2.6 1 23 310 332 310 332 0.98 11 13 0.0041 0.12 13.7 6.0 1 23 338 360 338 360 0.97 12 13 1.3e-06 3.9e-05 24.7 3.2 1 23 366 388 366 388 0.98 13 13 0.00019 0.0055 17.9 5.9 1 23 394 416 394 416 0.98
Sequence Information
- Coding Sequence
- ATGGAAAGTAAAAGCCCGCTTTTCAGTTACGAAATTAAAACCGAACAGGTGGAAGATGTGAAGTTTTTTAATGTGGCTGATTTGCATCATTCAATTGACATTAAGGAGGACAACGATCCAGAGAGTATAACTGAGAAGAGTTCAGCAGGAAAGTGTAAGCTCTTAAATTTATTTGAGTGTGCAATTTGTGACTATAAATGTGCATATAAATCATATTTAACCTCACATTTGAAGACCCACACCGGCGAGAAACCATACAGTTGTGAAATTTGTGACTATAAATCTGTACAAAAATCAAATCTAAAAACGCATTTAAATACTCACACAGGTACGAAGCCGTTTCATTGTGGATTTTGTGACTATAAATGTGCAAGTAAATCACATTTAACATTACACCTTCACACTCACACCGGTGAGAAGCCATTGAAATGTGAAATATGTGACTATAAATGCACACAAAAATCACATTTAACATCCCACTTACGAACGCATTCCGGTGAAAAACCGTTTAACTGTGAAGTTTGTGAACGTAAATTTGCACATAAATCCGACCTAAAACATCATTGTAAAACACACACGGGCGTAAAACCATTTGGATGTGAAATATGTGACTATAAATGTGCACGTAAGTCATACTTAAAATCGCATCTAAAAACTCACACAGGCGAGAAATCGTTGACTTGTGAAGTATGCGGCTATAAGTGCGCGTTAAAATCAAATTTAAACGTCCATTTAAAAACTCACTCGGGTGCAAAGGCGTATATTTGTGAAATTTGCGATTTTAAATATGCCCATAAAAAAAGTTTAATAATGCATTTAAAAACTCACACTGATCAGGAACCGTTGCAATGTGAACTCTGTGACTATAAATCTATCCATAAATTAAACTTAATCTTGCATTTAAAAACTCACTCCGGGGTTAAACCGTTTCGTTGTGAAGTTTGTGGCTATAAATGTGCAAGAAAATCGAGTTTAAAAGTTCATTTAACTACCCACAGCGGGGAGAAACCGCATCATTGTGACGTTTGTGACTACAAATGTGCACGAAGATCAGGGTTGAATATGCACTTAAAAACCCATACCGGCGAAAAGCAGTATAACTGTGATATTTGTGACTATAATTGTTCACAAAAATCAAATTTAAAAAGACATTTAAGAGTACACACCGGGGAAAAACCGTTTCATTGTGAAGTTTGCGACTATAGTTGTACACGAAAATCAAGTTTTGAGAAGCATTTAAAAATCCACGTCGACTAG
- Protein Sequence
- MESKSPLFSYEIKTEQVEDVKFFNVADLHHSIDIKEDNDPESITEKSSAGKCKLLNLFECAICDYKCAYKSYLTSHLKTHTGEKPYSCEICDYKSVQKSNLKTHLNTHTGTKPFHCGFCDYKCASKSHLTLHLHTHTGEKPLKCEICDYKCTQKSHLTSHLRTHSGEKPFNCEVCERKFAHKSDLKHHCKTHTGVKPFGCEICDYKCARKSYLKSHLKTHTGEKSLTCEVCGYKCALKSNLNVHLKTHSGAKAYICEICDFKYAHKKSLIMHLKTHTDQEPLQCELCDYKSIHKLNLILHLKTHSGVKPFRCEVCGYKCARKSSLKVHLTTHSGEKPHHCDVCDYKCARRSGLNMHLKTHTGEKQYNCDICDYNCSQKSNLKRHLRVHTGEKPFHCEVCDYSCTRKSSFEKHLKIHVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -