Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996559.1:25482483-25489346[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00016 0.0045 18.2 0.4 1 23 202 224 202 224 0.98

2 12 0.00016 0.0045 18.2 2.9 1 23 230 252 230 252 0.99

3 12 6e-05 0.0017 19.5 6.9 1 23 258 280 258 280 0.98

4 12 0.00028 0.0082 17.4 1.8 1 23 286 308 286 308 0.98

5 12 5.7e-06 0.00017 22.7 1.0 1 23 314 336 314 336 0.98

6 12 9.5e-05 0.0027 18.9 3.0 1 23 342 364 342 364 0.98

7 12 0.011 0.32 12.4 3.9 1 23 370 392 370 392 0.98

8 12 6.1e-05 0.0018 19.5 1.2 1 23 398 420 398 420 0.98

9 12 0.0034 0.098 14.0 1.8 1 23 430 452 430 452 0.95

10 12 4.4e-06 0.00013 23.1 0.8 1 23 458 480 458 480 0.98

11 12 5.4e-05 0.0016 19.6 2.2 1 23 486 508 486 508 0.98

12 12 8.6e-05 0.0025 19.0 2.4 1 23 514 536 514 536 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00016	0.0045	18.2	0.4	1	23	202	224	202	224	0.98
2	12	0.00016	0.0045	18.2	2.9	1	23	230	252	230	252	0.99
3	12	6e-05	0.0017	19.5	6.9	1	23	258	280	258	280	0.98
4	12	0.00028	0.0082	17.4	1.8	1	23	286	308	286	308	0.98
5	12	5.7e-06	0.00017	22.7	1.0	1	23	314	336	314	336	0.98
6	12	9.5e-05	0.0027	18.9	3.0	1	23	342	364	342	364	0.98
7	12	0.011	0.32	12.4	3.9	1	23	370	392	370	392	0.98
8	12	6.1e-05	0.0018	19.5	1.2	1	23	398	420	398	420	0.98
9	12	0.0034	0.098	14.0	1.8	1	23	430	452	430	452	0.95
10	12	4.4e-06	0.00013	23.1	0.8	1	23	458	480	458	480	0.98
11	12	5.4e-05	0.0016	19.6	2.2	1	23	486	508	486	508	0.98
12	12	8.6e-05	0.0025	19.0	2.4	1	23	514	536	514	536	0.98

Sequence Information

Coding Sequence: ATGGATAAGTTGATACTTTTGACCGAGGTCGAAAAATTTGAAGAAGCCATCGATGGTTTGCGAGCTCCTAGTAATCACAAAATGGAGGACTTGGATGCTGAATTAGAAGAATTGCACCACTCTATTGATATTAAGGAAGAAGACTATCCTAATTTAGAATATCAAGAGGATAATAATGAGGTACATTATAAATTATTTTATTTGTTGTCAAAAATGATGAAATTCCAGACAAAGAAAAGTAGCATGCAGAATTTCAAGAAGCCATCGATAGTTTGTTTATTGTCTAATTTGACTTCCATGACCTCCATTTCGTTTGTTGTCCATTTTATAACAAACAAAGTGGAGGTCATAGAAGTCGAGTCAGAAGATTTGCACTACTTTGTTGATATTAAGGAAGAAGACGATCCAAATTTTTTATATCAACAGAACTTTAACGAGAGTACTCCTTGGGGTTCAATTAAGACAGAAGAAATAGAATCAAACTTGGAATATTTGCATCATCGTTCCGTTAATATTCAAGAAGGGACTTCAGTTTGCCTTCAGAAAACAAGTGGTCAACCTCGTAAGCGTGAAATTTCTAATTATAAATCAGGGGATAAACCGTTCATGTGTAAAATTTGCGGTTACAAATATGCGTTAAAAGGCACGTTAAAAATTCATTTAAAAATTCATATAGGCCAGAAATCCTTCAAGTGTGAAATTTGTGACTATAAATCTATACATAAAGGAAGTTTGAAAAGTCATTTAAAAACGCATACAGGCGAAAAGCCGTTCATGTGCGAAATTTGTGGTTACAAATGTGTACATAAGGGGCATTTAAGAAAGCATTTAAGAACGCACAGGGGTGGGAAATCGTTTGTATGCGAAATTTGTGGTTTTAAATCTGCACATAAGGGACATTTAATAATGCACTTAAGATCTCATAAGGACGAAAATTTGTTTACGTGTGAAATTTGTGGCTACAAATTTGTATTTAAGGGTAGTTTAAAACGACATTTAAAAGGCCATACAGGCGAGAAATTGTTTATGTGTAAAATTTGTGACTATAAAACTACACATAAGGGAAGTTTAAAAAGTCATATAAAAATTCATACGGGCGAGGAATGTTTTATGTGTAAAATGTGTGACTTTAAATCGATACATAAGAGAAGTTTAGAAATGCACTTAAAAACTCACTCAGGTTTGAAACCGTTCACGTGTGAAATTTGCGACTACAAATCCGTACGTAAAGATTCTTTGAGAAGTCATTTAAAAAGTCACGTGAAGAGTCATATAGGTGAGAAAAAGTATACATGTGAAATATGTGGCTTCAAATCTCTACATAAGGGAAATTTAAATGACCATTTGAAAACTCACTCGCAAGAGAAACCGTTCACGTGTGAAATTTGTGATAACAAATTTGCACGTAAAAGCAGTCTAAAAATTCACTTAAAAATTCATACGGGGGAGCAATCGTTTATTTGTAAAATTTGTGGTGCTAAATTTATACATCGAAGCAGTTTATATACTCATTTGAAAAGTCATTCAAACGTAAAACCGTTTATGTGTGAAATTTGTGACTACAAATCTGTACATAAGGGAAATTTAAAAACTCATTTGAAAACTCATACGAAAGAAAAGTCATCTTATAATGCGCCGGTAGTCTGA
Protein Sequence: MDKLILLTEVEKFEEAIDGLRAPSNHKMEDLDAELEELHHSIDIKEEDYPNLEYQEDNNEVHYKLFYLLSKMMKFQTKKSSMQNFKKPSIVCLLSNLTSMTSISFVVHFITNKVEVIEVESEDLHYFVDIKEEDDPNFLYQQNFNESTPWGSIKTEEIESNLEYLHHRSVNIQEGTSVCLQKTSGQPRKREISNYKSGDKPFMCKICGYKYALKGTLKIHLKIHIGQKSFKCEICDYKSIHKGSLKSHLKTHTGEKPFMCEICGYKCVHKGHLRKHLRTHRGGKSFVCEICGFKSAHKGHLIMHLRSHKDENLFTCEICGYKFVFKGSLKRHLKGHTGEKLFMCKICDYKTTHKGSLKSHIKIHTGEECFMCKMCDFKSIHKRSLEMHLKTHSGLKPFTCEICDYKSVRKDSLRSHLKSHVKSHIGEKKYTCEICGFKSLHKGNLNDHLKTHSQEKPFTCEICDNKFARKSSLKIHLKIHTGEQSFICKICGAKFIHRSSLYTHLKSHSNVKPFMCEICDYKSVHKGNLKTHLKTHTKEKSSYNAPVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -