Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:22094510-22095952[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.039 1.1 10.7 4.2 1 23 63 85 63 85 0.97

2 15 0.00031 0.009 17.3 3.3 1 23 91 113 91 113 0.99

3 15 0.00067 0.019 16.2 2.4 1 23 119 141 119 141 0.97

4 15 0.0013 0.039 15.3 2.0 1 23 147 169 147 169 0.97

5 15 4.8e-06 0.00014 23.0 2.6 1 23 175 197 175 197 0.98

6 15 1.9 54 5.4 5.5 3 23 205 226 203 226 0.96

7 15 0.0021 0.06 14.7 3.5 1 23 232 254 232 254 0.98

8 15 0.00019 0.0056 17.9 2.0 3 23 262 282 260 282 0.98

9 15 0.00012 0.0035 18.6 2.4 1 23 288 310 288 310 0.97

10 15 5.7e-05 0.0017 19.6 2.0 1 23 316 338 316 338 0.97

11 15 0.00038 0.011 17.0 2.0 1 23 344 366 344 366 0.97

12 15 0.00021 0.0059 17.8 1.9 1 23 372 394 372 394 0.97

13 15 0.00024 0.007 17.6 2.2 1 23 400 422 400 422 0.98

14 15 0.00016 0.0045 18.2 2.3 3 23 430 450 428 450 0.98

15 15 0.00043 0.012 16.8 3.7 1 23 456 478 456 478 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.039	1.1	10.7	4.2	1	23	63	85	63	85	0.97
2	15	0.00031	0.009	17.3	3.3	1	23	91	113	91	113	0.99
3	15	0.00067	0.019	16.2	2.4	1	23	119	141	119	141	0.97
4	15	0.0013	0.039	15.3	2.0	1	23	147	169	147	169	0.97
5	15	4.8e-06	0.00014	23.0	2.6	1	23	175	197	175	197	0.98
6	15	1.9	54	5.4	5.5	3	23	205	226	203	226	0.96
7	15	0.0021	0.06	14.7	3.5	1	23	232	254	232	254	0.98
8	15	0.00019	0.0056	17.9	2.0	3	23	262	282	260	282	0.98
9	15	0.00012	0.0035	18.6	2.4	1	23	288	310	288	310	0.97
10	15	5.7e-05	0.0017	19.6	2.0	1	23	316	338	316	338	0.97
11	15	0.00038	0.011	17.0	2.0	1	23	344	366	344	366	0.97
12	15	0.00021	0.0059	17.8	1.9	1	23	372	394	372	394	0.97
13	15	0.00024	0.007	17.6	2.2	1	23	400	422	400	422	0.98
14	15	0.00016	0.0045	18.2	2.3	3	23	430	450	428	450	0.98
15	15	0.00043	0.012	16.8	3.7	1	23	456	478	456	478	0.97

Sequence Information

Coding Sequence: ATGGAACGGATCGATCAAGTACCGCAACCTCCATATAATTCTGATAGCTGTAAAATTGAAGTAGAAGACCTAGAAGATGTGAAGTTTAATTTGGAAGATTTACATCATTCGATAGACATCAAAGACGAGAGCGATGCAGAACAATTACCATTGGAGAAACCTGCGAGAAAAACTAAAAATTCAAATTTTATTTGTCAGTTTTGTGATTTTAAAAGTGCTCATAAATCAAGTTTAAAACTACATTCAAAAACTCACGCAGGCGAGAAATCTTTTACTTGTGAAATTTGCGACTACAAAAGTGCAAAGAAACAACATTTAAATAATCATCTTAAAACTCACACTGGCGAAAAACCTTTTGCTTGTCAGATTTGTGACTATAAATGTACTGAAAATTCACGTTTAAAAATTCACATCAAAACTCACACTGGCGAAAAACCTTTTGCTTGTCTAATTTGTGACTATAAATGTACTGAAAATTCACGTTTAAAAGTTCACATAAAAACTCACACAGGAGAAAAACATTTTGTTTGTGAGATTTGTGACTATAAATGTGCTCAAAAATCATCTTTAAATAGACATTTGAAAACTCACACAGGTGAAAAACCTTTTGGTTGTGATACTTGTTTATATAAATGTCATAGCAGGTCATATTTAAAGAAACATTATTTAAGAATTCATACAGGAGAAAAACCTTTTACTTGTAAGATTTGTGACTATAAATGTGCTGAAAAATCACGCTTAAAATATCATATAAAAATTCACACAAGCGAGAAACTTTTTGGTTGTGAGATATGCGACTATAAATGTGTTCAAAAATCATATTTAAGGGAACATTTAAAAACTCACACAGGAGTAAAACCTTTTGCATGTGAGATTTGTGACTATAAATGTGCTAGCAAATCAAAGTTAAATGTTCATAGAAAAACTCACACAGGCGAGAAACTTTTTGCTTGCGAGATATGTGACTATACATGTATTCAAAAATCATATTTAAGGGAACATTTAAAATCTCACACAGGAGTAAAACGTTTTGCTTGTGAGATTTGTGACTATAAATGTGTTTATAAATCACGTTTAGAAAGTCATATAAAAACTCACATAGGCGAAAAATCTTTTGCCTGTGAGATATGTGCCTATAAATGTGTTCAAAAATCAAATTTAAGTAAACATTTACAAACTCACACAAGAGTAAAAACTTTTACATGTGTGATTTGTAACTATAAATGTGCTCTAAAATCAAATTTAAGAGATCATATACAAACTCACACAGGCGACAAACCTTTTGGTTGTGAGATATGTGACTATAAATGTGTTCGAAAATCATATTTAAGGGAACATTTAAAAACTCACACAGGAGTAAAACCTTTTGCTTGTGTTATTTGTAACTATAAATGTGCTACAAAATCACATTTAAATTCTCATTTAAAAATTCACATGAGATAA
Protein Sequence: MERIDQVPQPPYNSDSCKIEVEDLEDVKFNLEDLHHSIDIKDESDAEQLPLEKPARKTKNSNFICQFCDFKSAHKSSLKLHSKTHAGEKSFTCEICDYKSAKKQHLNNHLKTHTGEKPFACQICDYKCTENSRLKIHIKTHTGEKPFACLICDYKCTENSRLKVHIKTHTGEKHFVCEICDYKCAQKSSLNRHLKTHTGEKPFGCDTCLYKCHSRSYLKKHYLRIHTGEKPFTCKICDYKCAEKSRLKYHIKIHTSEKLFGCEICDYKCVQKSYLREHLKTHTGVKPFACEICDYKCASKSKLNVHRKTHTGEKLFACEICDYTCIQKSYLREHLKSHTGVKRFACEICDYKCVYKSRLESHIKTHIGEKSFACEICAYKCVQKSNLSKHLQTHTRVKTFTCVICNYKCALKSNLRDHIQTHTGDKPFGCEICDYKCVRKSYLREHLKTHTGVKPFACVICNYKCATKSHLNSHLKIHMR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -