Rful006742.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:2886617-2887954[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.2e-05 0.0018 19.5 5.5 1 23 46 68 46 68 0.98 2 14 7.5e-05 0.0022 19.2 2.4 1 23 74 96 74 96 0.98 3 14 9.8e-05 0.0028 18.8 2.8 1 23 102 124 102 124 0.97 4 14 0.00018 0.0053 18.0 1.2 1 23 130 152 130 152 0.98 5 14 0.00053 0.015 16.5 3.6 1 23 158 181 158 181 0.94 6 14 0.00094 0.027 15.8 0.2 1 23 187 210 187 210 0.95 7 14 0.00094 0.027 15.8 0.3 1 23 216 239 216 239 0.96 8 14 0.00067 0.019 16.2 2.4 1 23 245 267 245 267 0.96 9 14 6.2e-05 0.0018 19.5 0.2 1 23 273 295 273 295 0.98 10 14 0.00059 0.017 16.4 3.1 1 23 301 324 301 324 0.98 11 14 0.52 15 7.1 3.2 2 23 331 352 330 352 0.96 12 14 0.0002 0.0058 17.9 0.3 2 23 359 381 358 381 0.95 13 14 0.00071 0.021 16.1 0.3 1 23 387 409 387 409 0.98 14 14 0.024 0.69 11.3 2.3 1 23 415 438 415 438 0.97
Sequence Information
- Coding Sequence
- ATGGATCAAAGTAATTTTAACATTAAATCAGAAGAACTGGACGATACTGAGTTCAACTCGGAAGACTTGCACCATTCGATCGACATCAAGGACGACATCATTTTACCGGAATCCCAAGTCCATATTCATCAACAATTTGAGTGCCATTTATGTAAGATTTTTTTTTATAATAAATCCCAACTTCGAAAACATTTAAAATCACATTTGCCCGAGAAACCTTTTGAGTGTGAAGTTTGCGATTATAAATGTTCTGGAAAATATCTGTTGACCGAGCATATGAGAAAACACACCGGGGAAAAACCGTTTTCATGTGAAATTTGTGACTATCGATGTTCTCGTAGACAACAATTGACTAGGCATGTGATATCGCACAACGAGGAAAAACCGTTCGTATGTGAAGTTTGTAACTGGAAAACTTTAACCAAATACAATTTGAAAATGCATATGAGAACCCACACAGGTGAGAAGCCCTTTTCGTGTGCACAATGTGACCATAAATTTTCGCTGAAAGATCATTTAAAACGGCATATTTTAGCGACTCACTTCAACGAAAAGCCATATGCATGTGATATTTGTGAATATGCCACATCGATTAAATATAATTTGAAAAGTCATATGATGGCATCTCACACAGGTGAGAAACCATTTATTTGTGAAGTTTGTGACTATAGGTCCACATTCAAACGGCAATTGATTGCGCATATTATGGTTAAGCACACCGGGGAAAAACCTTACTTATGTAAAATTTGTAGCTACAGAACCTCGTTCAAACAGCAGCTGGGTCGGCATATGAGAACGCACAGTGGGTTAAAACCGTTTTCATGTGAAATTTGTGGTTATGCAACTGCAGTAAAATTTAACTTGAAAGGGCATATGAGATCTCACACCGGGGAGAAGCGGTATCGGTGTGAAAGTTGCGAGTACCAGACTTCATACAAACGACAACTGAGGAAGCACATTCGGACAACCCACTCTACCCAGAAACCGTTGAAATGTAAGCTATGCTCTTATAAATGCTTCGTAAAACGAGAGTTGATAGAGCATAAGATCACTCACACTGGTAAAACACCGATTTCATGTGGATTATGCAACTTTAAGTTTTCATTGAAAAGTGACTTGAGACGGCATATTTTGGTAATTCACACTAACGAAAAACCGTACGCTTGTGAGCTTTGTCCATATGCAACCGCAATCAAATTTAACTTGAAAAGTCACATGAAAACCCACACCAGTGAGAAACCGTTTGAATGTGCTGTTTGTGATTATAAATCCAGATTCAAACATCTACTGAGTAATCATATCATCAAATTTCACATCCGCACCAAATTGAGACAATAA
- Protein Sequence
- MDQSNFNIKSEELDDTEFNSEDLHHSIDIKDDIILPESQVHIHQQFECHLCKIFFYNKSQLRKHLKSHLPEKPFECEVCDYKCSGKYLLTEHMRKHTGEKPFSCEICDYRCSRRQQLTRHVISHNEEKPFVCEVCNWKTLTKYNLKMHMRTHTGEKPFSCAQCDHKFSLKDHLKRHILATHFNEKPYACDICEYATSIKYNLKSHMMASHTGEKPFICEVCDYRSTFKRQLIAHIMVKHTGEKPYLCKICSYRTSFKQQLGRHMRTHSGLKPFSCEICGYATAVKFNLKGHMRSHTGEKRYRCESCEYQTSYKRQLRKHIRTTHSTQKPLKCKLCSYKCFVKRELIEHKITHTGKTPISCGLCNFKFSLKSDLRRHILVIHTNEKPYACELCPYATAIKFNLKSHMKTHTSEKPFECAVCDYKSRFKHLLSNHIIKFHIRTKLRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -