Rful006921.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:8785179-8796418[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 8.1e-06 0.00023 22.2 2.1 1 23 128 150 128 150 0.99
2 15 0.00012 0.0035 18.6 3.0 1 23 156 178 156 178 0.99
3 15 9.2e-05 0.0026 18.9 2.2 1 23 184 206 184 206 0.99
4 15 0.0013 0.037 15.3 0.9 1 23 212 234 212 234 0.99
5 15 0.00059 0.017 16.4 3.1 1 23 240 262 240 262 0.99
6 15 0.016 0.47 11.9 3.2 1 23 268 291 268 291 0.96
7 15 0.0033 0.096 14.0 7.0 1 23 297 319 297 319 0.99
8 15 0.00071 0.02 16.1 2.9 1 23 325 347 325 347 0.98
9 15 0.0041 0.12 13.7 0.9 1 23 353 375 353 375 0.96
10 15 0.00015 0.0042 18.3 3.4 1 23 381 403 381 403 0.98
11 15 0.0003 0.0085 17.3 7.6 1 23 409 431 409 431 0.99
12 15 0.0009 0.026 15.8 3.1 1 23 437 459 437 459 0.99
13 15 0.00017 0.005 18.1 1.1 1 23 465 487 465 487 0.99
14 15 0.0029 0.083 14.2 4.8 1 23 493 515 493 515 0.98
15 15 0.0011 0.033 15.5 3.2 1 23 521 543 521 543 0.99

Sequence Information

Coding Sequence
ATGGATAAGTTGAAACCCTTGATCAAGTTTGAGAAACTAGAAGAAGCCACCGATGGTTTTCGAGGTCCCAGTGATGATCAAGAAATTACAACAAACGAAATGGAGCTGTTGGATGCCAAATTGGAAGATCTGCACCACTTCATAGATATTAAGGAAGAAGAAGATTATGCTAATTTAGACTATCAGGAGGATGTTAATGAGAGTACTCCATCACATTCAAACAACCTCTCCGAAGTTAAAACTGAAGAAATAGAATTAAACTTGGATAAGTTGCATCATCATCCGATTAATATTCAAGAAGAGATTTCAGATCCTCTTTGGATGCCGGAAACAAATTGTACTCCGCTTGAAATTTCTAACTGTAAGCCAGTCGATAAACCGTTTAAATGCGAAATTTGTGACCGCAGATTTGCACATAAGAGACTTTTGAGGGAGCATTTAATAACGCACTCAAACGATAAAAAGTTTAAGTGTGAAATTTGCGACTACAAAAGTACACGTAAGCGATATTTACAAAGTCATTTGAAATCGCATTCGGGGGATAAACCGTACAAGTGTGAAATCTGTGACTATCAGACTGCGTTTAGGGAACATTTAAAAGTTCATTTAAGAACGCATTTAGGTGATAAACCGTTTAAATGTGAACTTTGTGACTATAAAACTGCACGAAAACAAGATTTAGGAAGTCATTTAAAAATGCATTCAGGTGATAAACCTTTTCAGTGTGAACTTTGTGACTACAAGTCTGCACATAAGGGAAATTTCACCAGTCATCTGAAAACTCACACTGCGGATAAACCGTTTAAATGTGAGATTTGTGATTACAAATCGGCACATAAGAGACTTTTAAAGGATCATTTTTTAAGAACGCATTCGGTCGATAAACCGTTTAAATGCGAATTTTGTGATTATAAGTGTTCACTTAAGCGATATTTAAAAAGGCATTTAAAAACACATTCCGACGATAAGCCGTTTGAGTGTGAAATGTGCGACTACAAATCGGCACATAAAACAAATTTTCAAATTCATTTAAAAACGCATTCAAATGATAAACCGTTCGAATGCGAAATTTGTGACTTCAAATCCGCACGAAAACAAGATTTAAAAAACCATTTTACAATTCATACGGGAGAGAAACGGTTCATATGTGGAATCTGCGATTACAAATCTTCACATAAGGGACATTTAAGGGAACATTTAAGAACGCATTCGGGGGATAAACCGTTTAAATGTGAAATTTGCGATTATAAATGTTCTCATAAGAACAACTTAAAATATCATTTAAAAACGCATTCGGGTGATCGACCGTTCAAGTGTGATATTTGCGACTTTAAATTTGTATGTAAGGGAAATTTAAAAAATCATTTATTAACGCATTCGGGTGATAAACCGTTTAAATGTGAAAATTGTGACTATAAATCTGCAAAAAAAGGAGATTTAAAAGTTCACTTAAAAACGCATTCGGGTGATAAACCGTTCCAGTGTGAAATGTGTGAGTACAAAACTGCGCATAAGGGACATTTAAAAACTCATTTAACAACTCATACAAAACGTAAGCCGTTTAAGTGCGGAATTTGTAAGTTTAGATCTGCTAAAAGGAAGAATTTAAAACGTCATTTAAAATCGCATACCGTCTCAATATAG
Protein Sequence
MDKLKPLIKFEKLEEATDGFRGPSDDQEITTNEMELLDAKLEDLHHFIDIKEEEDYANLDYQEDVNESTPSHSNNLSEVKTEEIELNLDKLHHHPINIQEEISDPLWMPETNCTPLEISNCKPVDKPFKCEICDRRFAHKRLLREHLITHSNDKKFKCEICDYKSTRKRYLQSHLKSHSGDKPYKCEICDYQTAFREHLKVHLRTHLGDKPFKCELCDYKTARKQDLGSHLKMHSGDKPFQCELCDYKSAHKGNFTSHLKTHTADKPFKCEICDYKSAHKRLLKDHFLRTHSVDKPFKCEFCDYKCSLKRYLKRHLKTHSDDKPFECEMCDYKSAHKTNFQIHLKTHSNDKPFECEICDFKSARKQDLKNHFTIHTGEKRFICGICDYKSSHKGHLREHLRTHSGDKPFKCEICDYKCSHKNNLKYHLKTHSGDRPFKCDICDFKFVCKGNLKNHLLTHSGDKPFKCENCDYKSAKKGDLKVHLKTHSGDKPFQCEMCEYKTAHKGHLKTHLTTHTKRKPFKCGICKFRSAKRKNLKRHLKSHTVSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-