Rful005823.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:14258606-14259820[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.1 2.3e+02 3.4 0.0 13 23 4 14 2 14 0.87 2 15 0.0008 0.023 16.0 3.9 1 23 20 42 20 42 0.98 3 15 0.002 0.059 14.7 2.8 1 23 48 70 48 70 0.97 4 15 0.00028 0.008 17.4 3.6 1 23 76 98 76 98 0.97 5 15 9.5e-05 0.0027 18.9 4.5 1 23 104 126 104 126 0.98 6 15 7.6e-06 0.00022 22.3 2.1 1 23 132 154 132 154 0.99 7 15 0.00015 0.0042 18.3 3.3 1 23 160 182 160 182 0.98 8 15 0.0002 0.0057 17.9 4.9 1 23 188 210 188 210 0.98 9 15 0.0071 0.2 13.0 2.4 1 20 216 235 216 236 0.96 10 15 6.4e-06 0.00018 22.6 2.4 1 23 240 262 240 262 0.98 11 15 0.00028 0.0082 17.4 3.4 1 23 268 290 268 290 0.97 12 15 0.001 0.03 15.6 3.0 1 23 296 318 296 318 0.98 13 15 0.00095 0.027 15.7 4.3 1 23 324 346 324 346 0.97 14 15 2.2e-05 0.00065 20.9 3.5 1 23 352 374 352 374 0.98 15 15 0.011 0.31 12.4 5.5 1 23 380 402 380 402 0.97
Sequence Information
- Coding Sequence
- ATGGTAGACTGTGGACAGTTAAAAGAACATTTAAAAACTCACACTGGTGAGAAACCTTTTGTTTGTAAGATTTGTGACTATAAATGTGCACAAAGAAGATTTTTAAAGGAACATTTAAAAACTCACACAGGTGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACAAAGGGGACATATAAAAGAACATTTAAAAACTCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACACAGAGCAAGTTTAAAAACACATTTAAAAACTCACACAGGTGAGAAACCTTTTGTTTGTCAGATTTGTGACTATAAATGTGCACACAGAGCAAATTTAAAAACACATTTAAAAACTCACACAGGCGAGAAACCTTTTACTTGTGTGATTTGTGACTATAAATTTGCACAAAGAGCACATTTAAAAGAACATTTAAAAACTCACACAGGTGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTACAAGAGGAGAACATTTAAAAGTACATTTAAGAACTCATACTGGTGAGAAACCTTTTGTTTGTAAGATTTGTGACTATAAATGTGCACACAGAGCAAGTTTAAAAACACATTTAAAAACTCACACAGGTGAGAAACCTTTTGTTTGTCAGATTTGTGACTATAAATGTGCACAAAGACAACATTTAAAAACTCACACAGGCGCGAAACCTTTTGTTTGTGATATTTGTGACTATAAATGTGCACAAAAGGGACAGTTAAAAAGACATTTAAAAACTCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACATAGAGCAAGTTTAAAATCACATTTAAAAACTCACACAGGTGAGAAACCTTTTGTTTGTGAGATTTGTGACTATAAATGTGCACAAAGAGGACATATAAAAGAACATTTAAAAACTCACACAGGCGCGAAACCTTTTGCTTGTGAGTTTTGTGACTATAAATGTGCACAAAGGGGACATTTAAAAGAACATTTAAAAACTCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCAAGAAGAGATCATTTAAAAATACATTTAAGAACTCACACAGGTGAGAAACCTTTTTGTTGTGAGATCTGTGATTTCAAATGTGCTCAAAATAGATCTTTAAAACTTCATTTAAAAAGTCACAATGCATAG
- Protein Sequence
- MVDCGQLKEHLKTHTGEKPFVCKICDYKCAQRRFLKEHLKTHTGEKPFACEICDYKCAQRGHIKEHLKTHTGEKPFACEICDYKCAHRASLKTHLKTHTGEKPFVCQICDYKCAHRANLKTHLKTHTGEKPFTCVICDYKFAQRAHLKEHLKTHTGEKPFACEICDYKCTRGEHLKVHLRTHTGEKPFVCKICDYKCAHRASLKTHLKTHTGEKPFVCQICDYKCAQRQHLKTHTGAKPFVCDICDYKCAQKGQLKRHLKTHTGEKPFACEICDYKCAHRASLKSHLKTHTGEKPFVCEICDYKCAQRGHIKEHLKTHTGAKPFACEFCDYKCAQRGHLKEHLKTHTGEKPFACEICDYKCARRDHLKIHLRTHTGEKPFCCEICDFKCAQNRSLKLHLKSHNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -