Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:111316977-111318857[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00086 0.025 15.9 2.9 1 23 78 100 78 100 0.98

2 16 0.00024 0.0069 17.6 0.3 3 23 108 128 106 128 0.97

3 16 0.79 23 6.5 0.8 1 23 134 157 134 157 0.95

4 16 0.004 0.12 13.8 0.4 1 23 213 235 213 235 0.96

5 16 0.002 0.058 14.7 0.5 3 23 243 263 241 263 0.98

6 16 0.0002 0.0057 17.9 0.7 1 23 277 299 277 299 0.97

7 16 0.00019 0.0056 17.9 2.9 1 23 305 327 305 327 0.98

8 16 0.016 0.45 11.9 2.7 1 23 333 355 333 355 0.97

9 16 0.0088 0.25 12.7 1.0 3 23 363 383 361 383 0.98

10 16 0.00013 0.0037 18.5 0.1 1 23 398 420 398 420 0.98

11 16 0.00031 0.0089 17.3 0.6 1 23 426 448 426 448 0.97

12 16 9.3e-05 0.0027 18.9 1.8 1 23 454 476 454 476 0.98

13 16 4.5e-05 0.0013 19.9 0.7 3 23 483 503 481 503 0.97

14 16 0.024 0.68 11.3 0.4 3 23 511 531 509 531 0.97

15 16 0.0017 0.049 15.0 0.8 2 23 539 560 538 560 0.96

16 16 0.00035 0.01 17.1 1.0 1 23 566 588 566 588 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00086	0.025	15.9	2.9	1	23	78	100	78	100	0.98
2	16	0.00024	0.0069	17.6	0.3	3	23	108	128	106	128	0.97
3	16	0.79	23	6.5	0.8	1	23	134	157	134	157	0.95
4	16	0.004	0.12	13.8	0.4	1	23	213	235	213	235	0.96
5	16	0.002	0.058	14.7	0.5	3	23	243	263	241	263	0.98
6	16	0.0002	0.0057	17.9	0.7	1	23	277	299	277	299	0.97
7	16	0.00019	0.0056	17.9	2.9	1	23	305	327	305	327	0.98
8	16	0.016	0.45	11.9	2.7	1	23	333	355	333	355	0.97
9	16	0.0088	0.25	12.7	1.0	3	23	363	383	361	383	0.98
10	16	0.00013	0.0037	18.5	0.1	1	23	398	420	398	420	0.98
11	16	0.00031	0.0089	17.3	0.6	1	23	426	448	426	448	0.97
12	16	9.3e-05	0.0027	18.9	1.8	1	23	454	476	454	476	0.98
13	16	4.5e-05	0.0013	19.9	0.7	3	23	483	503	481	503	0.97
14	16	0.024	0.68	11.3	0.4	3	23	511	531	509	531	0.97
15	16	0.0017	0.049	15.0	0.8	2	23	539	560	538	560	0.96
16	16	0.00035	0.01	17.1	1.0	1	23	566	588	566	588	0.98

Sequence Information

Coding Sequence: ATGGAAAATGGACAGTGTGTAACTTTGGAAAAAGTTGAAATAAAAGAGGAGAATTTTGAATTTATAGCTAATCAGTCAGAGAACGAAAATTTTGATGGACTAAATAAGCTCGAGGAATTCGAATGCGAGCTGGAAGATTTTCAATTTTCTGTTGACGTCAAACAAGAGGAAGAAATCGCTCTGGTTGGAAGTAACGCACTGGAACCTGTAAAATTTAAGATCGAAAAATTGTTTGAGTGCGAAACTTGTAATTACAGAAGTGCATACAAAAGTCACTTTGAACGCCACGTACGAATTCATTCGGGTGAAAAACCATTTGGATGCGAAATTTGTGATTATAAATCTGCAGACAAAAGCAGCTTACAAAGACACGTTCGACTTCACGGAAGCAAAAAACCGTTTCAATGTGTAAGTTGCGATTTTAAAACTTGGAACGAAAATAATTTACAGCGGCATACCTTGAGGATTCATTTTGACGAAAAGCCGTTTTTGCGTGATTTATGTGAAAATAAAACCTCGGACACGTCTCATTTGCGGTTTCATGCAGGCCATGAGTCGTTTGCGTGTGAAATTTGTGGACCGAAGAAAATACAAAAACATTTTAAATTTTACCGACAAATTAACTTTGAGAAACGATTTGCGTGTAGAGTGTGTGATTATAGGGGTTTGGATAATTCCAGCTTACAACGGCATATCAGGACTCACACAGGTGAAAAACCTTTTGGATGTGAGATTTGCGACTTCAGATCAGCTTTAAAGAGCAATTTAACTAAGCACTTGAAAATTCATCAATGTAGGGAACCGGTGAAAATTAAACGTGAAAAGAAATTTTTTTGTGGAACCTGCGGATATGGAACGTCAACCAACACAAATTTATTACGACACCTAAAAGTTCATTCGAATGAAAAACCGTTTTCTTGTGATAGCTGCAGTTACAAATGCGCAGATAAGAGTAGCTTACGGAGACACATAAGAATTCACACGGGGGAAAAACCGTTTTCGTGTGAGACCTGCAGTTACAAATGCGGAGATAGCGGTAGTTTCAGACGACATATACAACTCCACTCGGGCGAAAAGCCATTCGGATGTGAGATTTGCAGTTTTAGAACAGCGCTAAAAAGTAATTTATACAAACATTTAAAAACTCACGAACCGAAGGAACATGAAGTGAAAATCGAACGGGAAAAGATTTACGTATGCGAAATTTGTGGGTATCGAACTGCAATTAGTACGAATCTACTCCGCCACTTAAGAATACACTTGGGGGAGAAACCGTTCTCGTGTGAAATTTGCAAATATAAGTCGGCAGATAAGAGCAGTTTAATACGGCACGAGAGACTTCACAGCGACGTGAAATCTTTTATGTGTAAAGTTTGCGACTACAAATCCAACGATAGGAGCAGCTTAAAGAAACACTTAAAGATTCACGGAGAAAAGACGCTGGCATGCGAAATTTGCGATTTTAAAACTGTGAGCAAAAATAATCTACAGCGCCACTTGAGAACTCACACGGGAGAAAAACCGTTCGGGTGTGATTTGTGCAGTTATAGGAGCGCCGATAAAAGTAGTCTGATGAAACACGGGAAAGTTCACACTTACGATCAAACTTTTCTTACGTGCCAAGTTTGTAATAAACAATTTATCGAAAAAAGCAGCTTCGACAGGCATGCGAAAATCCACACAGGAAATAAACCCTTCGAATGCAAGATTTGCAGCTTTAGGTCCTCTGAAAGTGGCAATTTGAAGCGGCATTTGAAAATTCATAACAGAAAGGAAAAAGAGAAAAACGTTAAGTAA
Protein Sequence: MENGQCVTLEKVEIKEENFEFIANQSENENFDGLNKLEEFECELEDFQFSVDVKQEEEIALVGSNALEPVKFKIEKLFECETCNYRSAYKSHFERHVRIHSGEKPFGCEICDYKSADKSSLQRHVRLHGSKKPFQCVSCDFKTWNENNLQRHTLRIHFDEKPFLRDLCENKTSDTSHLRFHAGHESFACEICGPKKIQKHFKFYRQINFEKRFACRVCDYRGLDNSSLQRHIRTHTGEKPFGCEICDFRSALKSNLTKHLKIHQCREPVKIKREKKFFCGTCGYGTSTNTNLLRHLKVHSNEKPFSCDSCSYKCADKSSLRRHIRIHTGEKPFSCETCSYKCGDSGSFRRHIQLHSGEKPFGCEICSFRTALKSNLYKHLKTHEPKEHEVKIEREKIYVCEICGYRTAISTNLLRHLRIHLGEKPFSCEICKYKSADKSSLIRHERLHSDVKSFMCKVCDYKSNDRSSLKKHLKIHGEKTLACEICDFKTVSKNNLQRHLRTHTGEKPFGCDLCSYRSADKSSLMKHGKVHTYDQTFLTCQVCNKQFIEKSSFDRHAKIHTGNKPFECKICSFRSSESGNLKRHLKIHNRKEKEKNVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -