Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:3254805-3258886[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0005 0.015 16.6 5.4 1 23 117 139 117 139 0.98

2 17 0.0051 0.15 13.4 4.5 1 23 145 167 145 167 0.99

3 17 0.0016 0.047 15.0 5.6 1 23 173 195 173 195 0.98

4 17 0.0072 0.21 13.0 0.8 2 23 215 236 214 236 0.97

5 17 0.0002 0.0058 17.9 4.5 1 23 242 264 242 264 0.99

6 17 0.00065 0.019 16.3 1.9 2 23 271 292 270 292 0.97

7 17 0.023 0.67 11.4 3.2 1 23 298 320 298 320 0.97

8 17 6e-07 1.7e-05 25.8 1.6 1 23 326 348 326 348 0.99

9 17 0.00079 0.023 16.0 2.4 1 23 354 376 354 376 0.98

10 17 2.9e-05 0.00085 20.5 1.8 1 23 383 405 383 405 0.99

11 17 1.4 40 5.8 6.7 1 23 414 436 414 437 0.92

12 17 6.5e-05 0.0019 19.4 1.0 1 23 496 518 496 518 0.98

13 17 0.038 1.1 10.7 5.8 1 23 524 546 524 546 0.95

14 17 0.002 0.059 14.7 3.0 1 23 552 574 552 574 0.98

15 17 7.6e-06 0.00022 22.3 0.8 1 23 580 602 580 602 0.98

16 17 1.8e-05 0.00053 21.1 2.4 1 23 608 630 608 630 0.98

17 17 0.0013 0.037 15.3 3.0 1 23 636 658 636 658 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0005	0.015	16.6	5.4	1	23	117	139	117	139	0.98
2	17	0.0051	0.15	13.4	4.5	1	23	145	167	145	167	0.99
3	17	0.0016	0.047	15.0	5.6	1	23	173	195	173	195	0.98
4	17	0.0072	0.21	13.0	0.8	2	23	215	236	214	236	0.97
5	17	0.0002	0.0058	17.9	4.5	1	23	242	264	242	264	0.99
6	17	0.00065	0.019	16.3	1.9	2	23	271	292	270	292	0.97
7	17	0.023	0.67	11.4	3.2	1	23	298	320	298	320	0.97
8	17	6e-07	1.7e-05	25.8	1.6	1	23	326	348	326	348	0.99
9	17	0.00079	0.023	16.0	2.4	1	23	354	376	354	376	0.98
10	17	2.9e-05	0.00085	20.5	1.8	1	23	383	405	383	405	0.99
11	17	1.4	40	5.8	6.7	1	23	414	436	414	437	0.92
12	17	6.5e-05	0.0019	19.4	1.0	1	23	496	518	496	518	0.98
13	17	0.038	1.1	10.7	5.8	1	23	524	546	524	546	0.95
14	17	0.002	0.059	14.7	3.0	1	23	552	574	552	574	0.98
15	17	7.6e-06	0.00022	22.3	0.8	1	23	580	602	580	602	0.98
16	17	1.8e-05	0.00053	21.1	2.4	1	23	608	630	608	630	0.98
17	17	0.0013	0.037	15.3	3.0	1	23	636	658	636	658	0.99

Sequence Information

Coding Sequence: ATGGATAAATTGATACTCTTGGCCAAGATTGAGAAATTTGAAAGTGCGATCGATGATTCACAAGTACTCGGTGGAGATCACAAAATTGAGGTCAGGGACGCCGAATTAGAAGAATTGCACCACTCGATTGATATTAAGGAAGAATGCGATCCGGATTTGGGATATCAAGAGGATAGAAATGAGGAGCTTTCAAAGAGCCACTCTAAAATTAAGACTGAGGAAATAGAATTGAAGTTGGAAGATTTGTATCATCATTCCATTAATGGCATTCAAGAGGAACCTTCAATTCCTCTTCAGAAAACAAAAACACGTGGTAAATCTTTTACACGTAAATTTTCTAAAAAATCGTTTATGTGTGAATTTTGTGACTATACATCGGCACGAAAACACCATTTAAAAATTCATTTAAGAACCCATACCGGTGAGAAGCCGTTTAAGTGTGAAAGTTGTGACTATAAATGTGCATATAAGCAAAGCTTAAAAGATCATTTAAAAACTCATACCGGGGAAAAACCGTATATGTGTGGAATTTGTAATTACAAATGTGCCCAAAGGCAACATTTAAAAACTCACTTAAAAACTCATCGAGGCGACAAACCCTCGATGTGTAAAATTTACTACAACTCGGGCAAGAAATTACTCATGTGCAAATTTTGTGACTACAAATCTGCAAGTAAGGAACCCTTAAAATTGCATTTAAGGACCCACACAGGAGAAAAACCGTTCAAATGTGATATCTGTGACTACAAATGTGCGCAAAAGAAATATTTAAAAAATCATGTAAAAACTCATACAGGCGAGAAACCGTTGAAGTGCGGAATTTGTGATTACAAATGCATAGAACGGAGTAATTTAACAACGCATTGGAAAACGCACACTGGCGAAAAACCATTCACTTGTGAAATTTGCGGTTACAAGTGTTTACTAAAAAGCAGTTTGAAAAAGCATTTAAGTAGTCATTCCGGCGAAAAAGCATTTACTTGTGAAATTTGCGGAAACAAATTCGCACGGAAAACTAACCTAAAAAATCATTTAAGAACGCATACCGGGGAGAAACCGTTCATTTGTGAGTTGTGTGACTACAAATCTGGACATAGAGGGAATTTAAAAAAGCATTTGAAAACTCATGCGGGGGAAGATCGATGGTTTACGTGTGAAATTTGTGATTTTAAAACTACATATAATGCAAGTTTAAAACGACATTTAAGGACTCATACGGGGGAGAAATTGGCGAGGAAGTTCATTTGTGAATTTTGTGATTATAAAAGTGCGTACCGGGGACATTTAAAAAGACATTGCATAACTCATCATCAACGTCCATCAGAAACGATTACTTCAAAAATGGAAACTCAAAGTCATTCAAGCAGCTGCTCCCAAATGAAGACAGAAGAAATCGAGGTCAAATTGGAAAATCTTCACCATTCCGTTGAAATTAAAGAAGAGACTTCTCTTCTGGAAAGTCAACCTGAAGCAATCGAAAAACCGTTCAAATGTGGAATTTGTGCTAAAGGATTTTCACAAAATAAGGGACTTAAGAGGCATTTTTTAACTCACACGAACGAAAAAGCGTTTGCCTGTGATTGTTGTAACTACCAGTGTTCAGATAAAGGAAACTTTAACAGGCACTTAAGAACCCATAGCAACGAAAAGCCCTTCACGTGTCAAGTTTGCAATTATAAATCTGCTCATAGAGCAGATTTAAACAAACATTCCAGAACTCATACGGGCGAAAAACCATTTACGTGTGAAATGTGCGACTATAAATTTGCCGATAGAGGAGATTTAAATAAACACAAAAGAATTCATACGGGAGAAAAACCGTTTATGTGTCAAATCTGCGATTTTGTATGTACACGTAAAGACAGTCTAAATATTCACTTAAGGACCCATACGGGCGAAAAACCGTATACGTGTAAACTTTGTAATTATAAAAGTGCGCATAAAGGAAACTTTAATGACCATTTAAGGGTTCATACCGGCCAAAAACCGTTTGCGTGCGAAATTTGTGACTATAAATGTCACATGAAGGAAGATTAA
Protein Sequence: MDKLILLAKIEKFESAIDDSQVLGGDHKIEVRDAELEELHHSIDIKEECDPDLGYQEDRNEELSKSHSKIKTEEIELKLEDLYHHSINGIQEEPSIPLQKTKTRGKSFTRKFSKKSFMCEFCDYTSARKHHLKIHLRTHTGEKPFKCESCDYKCAYKQSLKDHLKTHTGEKPYMCGICNYKCAQRQHLKTHLKTHRGDKPSMCKIYYNSGKKLLMCKFCDYKSASKEPLKLHLRTHTGEKPFKCDICDYKCAQKKYLKNHVKTHTGEKPLKCGICDYKCIERSNLTTHWKTHTGEKPFTCEICGYKCLLKSSLKKHLSSHSGEKAFTCEICGNKFARKTNLKNHLRTHTGEKPFICELCDYKSGHRGNLKKHLKTHAGEDRWFTCEICDFKTTYNASLKRHLRTHTGEKLARKFICEFCDYKSAYRGHLKRHCITHHQRPSETITSKMETQSHSSSCSQMKTEEIEVKLENLHHSVEIKEETSLLESQPEAIEKPFKCGICAKGFSQNKGLKRHFLTHTNEKAFACDCCNYQCSDKGNFNRHLRTHSNEKPFTCQVCNYKSAHRADLNKHSRTHTGEKPFTCEMCDYKFADRGDLNKHKRIHTGEKPFMCQICDFVCTRKDSLNIHLRTHTGEKPYTCKLCNYKSAHKGNFNDHLRVHTGQKPFACEICDYKCHMKED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -