Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996560.1:16147382-16149319[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.3e-06 0.00013 23.1 1.2 1 23 94 116 94 116 0.99

2 14 0.49 14 7.2 5.2 1 23 122 144 122 144 0.98

3 14 0.0017 0.048 15.0 0.7 1 20 150 169 150 171 0.94

4 14 3.5e-06 0.0001 23.4 0.6 1 23 177 199 177 199 0.98

5 14 0.066 1.9 9.9 5.3 1 23 205 227 205 227 0.98

6 14 0.00035 0.01 17.1 1.2 1 23 232 254 232 254 0.96

7 14 0.046 1.3 10.4 0.4 1 21 262 282 262 283 0.95

8 14 2.3e-07 6.8e-06 27.1 0.6 1 23 289 311 289 311 0.98

9 14 0.0072 0.21 13.0 2.8 1 23 364 386 364 386 0.93

10 14 8.7e-05 0.0025 19.0 1.0 1 20 400 419 400 421 0.94

11 14 3.7e-06 0.00011 23.3 0.7 1 23 427 449 427 449 0.98

12 14 0.2 5.8 8.4 5.7 1 23 455 477 455 477 0.98

13 14 6.6e-07 1.9e-05 25.7 2.2 1 23 482 504 482 504 0.98

14 14 7.2e-05 0.0021 19.3 1.1 1 23 509 531 509 531 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.3e-06	0.00013	23.1	1.2	1	23	94	116	94	116	0.99
2	14	0.49	14	7.2	5.2	1	23	122	144	122	144	0.98
3	14	0.0017	0.048	15.0	0.7	1	20	150	169	150	171	0.94
4	14	3.5e-06	0.0001	23.4	0.6	1	23	177	199	177	199	0.98
5	14	0.066	1.9	9.9	5.3	1	23	205	227	205	227	0.98
6	14	0.00035	0.01	17.1	1.2	1	23	232	254	232	254	0.96
7	14	0.046	1.3	10.4	0.4	1	21	262	282	262	283	0.95
8	14	2.3e-07	6.8e-06	27.1	0.6	1	23	289	311	289	311	0.98
9	14	0.0072	0.21	13.0	2.8	1	23	364	386	364	386	0.93
10	14	8.7e-05	0.0025	19.0	1.0	1	20	400	419	400	421	0.94
11	14	3.7e-06	0.00011	23.3	0.7	1	23	427	449	427	449	0.98
12	14	0.2	5.8	8.4	5.7	1	23	455	477	455	477	0.98
13	14	6.6e-07	1.9e-05	25.7	2.2	1	23	482	504	482	504	0.98
14	14	7.2e-05	0.0021	19.3	1.1	1	23	509	531	509	531	0.97

Sequence Information

Coding Sequence: ATGGAACAAAAGACAAACAATGAAAATCATATTTCCATTCCTAAAAAAGAAAAAGATATCGAGGATAACATTCTAAATATTTTGACAGCTGAATATAACTCTAACCTAACTTATAAAAATGATGATTATGTACAAAGCTTTGAAGAAAATTTAGAAGATTTACATCATTCTATTGATATTAAGGATGAACCTGAAGAGCACGAATTGGAAACTTTACAAAACTTACAAACTCATCTTGCCAACCAAAAAATAATATGTAGATACAAGAACGAGGAATCGTACGAATGTAAAATTTGTAATAAAAACTTTAAGGGTAAAAAAGGCTTAAACCAACATTTGCGGATTCACACAGTCGAAAAACTTTATGCTTGTGATATTTGTGAGAAAAAATATCATTGTAAAACATACCTAAACTATCATTTACGAGTCCATACGGGTGAGAAACCGTATAGATGTGAAATTTGTGAAGAGAAATTTTCATTTGGGTCGTCATTAAGACGTCATTTTAGTACTTGTACGGGTAAGCGATATGTATGTCAAATCTGTAATTCAAAATTTACCCAAAAAGGAAATTTGCAAATTCACCTACGAATTCATTCGGGGGAGAAACCCTACGAGTGTGGCATTTGCAAAAAGAAATTTCATTGTAAACCATACTTAACCAAACATTTACAAATTCACACAAATAGGCAACATATTTGTCAAATATGCGAAGCAAAATTTTCCAAAAAAGGAAGCTTGACAACTCATCTACAAATTCATACGGCGACAGCTAAAAAATGGTATACGTGTGAACTTTGTGAACAGAAATTTTTTATTGTTTCGTCATTAAAACGTCATAGTAGAATTTGTTTGGGTAAACGGTATGCCTGCGAAATCTGTGATACGAAATTTACACGAAAAGGAAATTTGAAAATTCATCAACGAATTCATAAGGGCGAAAAATCGAAGAACAACATTGGTGGGAAAAATTGTTGTAATGTACGAGTTTCAGTTCCTATAAACAGCGCGCGAAAAAACCCTTGCAAAATATCTAACGCAAAATTCACTCAAAAAAGAAATTTACGAATTCATCCAATCAAGAAAAGGTTTTTATGTAAAATTTGTAAGCAAAACTTTTCATCGAGATATTTCTTAAAAAATCATTCAACAATTCACACAAACCAGAATCGACGGATTCATACGGATGAGAGGCAGTATACGTGTGAAATTTGCGAAAAAAAATTTGCATTTAGTTCATCACTAAGACGTCATTTCAGTTCTTGTACTGGCGAGCGATATGTTTGCCAAATTTGTAATTCAAAATTTACTCAAAAAGGAAATTTGCGAATTCACCTACGGATTCATACGGGCGAGAAGCCCTACGAGTGTGGCAACTGCGAGAAGAAGTTTCATTGTAAGCCATACTTGACCACCCATTTACGAAGTCATACTGACAAGCAATATGTATGTAAAATTTGTGATGAAATATTTACAAGAAAAAACCATTTAAAATCCCATCTAAGAATTCATACAAGCAAGACGTTTGCTTGTAAAATTTGTCAGCAAAACTTTTCATCTAGATATCGCTTGAATGTACATTTAAGAATTCATACGAGCAAATAA
Protein Sequence: MEQKTNNENHISIPKKEKDIEDNILNILTAEYNSNLTYKNDDYVQSFEENLEDLHHSIDIKDEPEEHELETLQNLQTHLANQKIICRYKNEESYECKICNKNFKGKKGLNQHLRIHTVEKLYACDICEKKYHCKTYLNYHLRVHTGEKPYRCEICEEKFSFGSSLRRHFSTCTGKRYVCQICNSKFTQKGNLQIHLRIHSGEKPYECGICKKKFHCKPYLTKHLQIHTNRQHICQICEAKFSKKGSLTTHLQIHTATAKKWYTCELCEQKFFIVSSLKRHSRICLGKRYACEICDTKFTRKGNLKIHQRIHKGEKSKNNIGGKNCCNVRVSVPINSARKNPCKISNAKFTQKRNLRIHPIKKRFLCKICKQNFSSRYFLKNHSTIHTNQNRRIHTDERQYTCEICEKKFAFSSSLRRHFSSCTGERYVCQICNSKFTQKGNLRIHLRIHTGEKPYECGNCEKKFHCKPYLTTHLRSHTDKQYVCKICDEIFTRKNHLKSHLRIHTSKTFACKICQQNFSSRYRLNVHLRIHTSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -