Rful010731.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:3222510-3224231[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00021 0.006 17.8 0.8 1 23 118 140 118 140 0.95
2 16 1.9 56 5.3 3.9 1 23 146 169 146 169 0.97
3 16 0.00062 0.018 16.3 0.2 1 23 175 197 175 197 0.97
4 16 0.0059 0.17 13.2 1.6 1 23 203 225 203 225 0.98
5 16 0.03 0.88 11.0 3.4 1 23 231 253 231 253 0.99
6 16 0.0041 0.12 13.7 2.0 1 23 259 281 259 281 0.97
7 16 6.2e-05 0.0018 19.5 0.5 1 23 287 309 287 309 0.99
8 16 0.0015 0.042 15.2 5.7 1 23 315 337 315 337 0.98
9 16 0.0057 0.17 13.3 1.5 1 23 343 365 343 365 0.97
10 16 0.00044 0.013 16.8 3.2 1 23 371 393 371 393 0.98
11 16 4.1e-05 0.0012 20.0 1.2 1 23 399 421 399 421 0.99
12 16 0.0018 0.053 14.8 1.8 1 23 427 449 427 449 0.99
13 16 3.6e-06 0.00011 23.3 0.3 1 23 455 477 455 477 0.98
14 16 3.4e-05 0.00097 20.3 1.1 1 23 483 505 483 505 0.98
15 16 2.5e-06 7.2e-05 23.9 1.3 1 23 511 533 511 533 0.99
16 16 0.15 4.4 8.8 0.2 1 23 539 561 539 561 0.97

Sequence Information

Coding Sequence
ATGGTAAGAACGTCAAATTTGGGCCAAAACAAAAGTTTTTTTTTTACTCTGGATTTTAAAAACAGTAAAATTTCGAAGTGGAGAACTAATTTTTTATGGTTATTCTTGTTTCAGGAAGCTTCCACCCATTCAATCAACAACGTTAAAATTAAAATCGAAGAAGAAGTGGAAATCAAATTGGAAGATTTGCATCATTCGATCGACATTAAAGAAGAAAATTCCAACCTACCATCAGAACCTTTGGGGTTATGCAGTGTCGAAAAGCCATTTAATTGCAAAATTTGTGACTTTAAATGTGAACACCAAGATAAATTTAAAATTAACGTTTGTACTCATTCAGGTGACAAACCATTTTTGTGTCAAATTTGTAACTTTAAATTTGCACGAAAAGGAGACTTAAAGTCTCATTTAGGAACCCATGCGGACAAGAAGCCGTTTATATGTGAATTTTGTAACTATCAATGCGGTTCCGAAAGAAGATTTAAAAGTCACTTAAAAACCGATCATCCTGACGAGAAACTGTTCATGTGCGAAATTTGTAACTTGAAGTTTGCACGCAAAGGAGAACTAAAACCGCATTTAATAACTCATGCGGAATATAAACCGTTTACGTGTGAACTTTGCGATTTTAAAAGCGGATACCGAAAAAACTTGAGCAGACATTTAAAGATTCATACAGGGGAGAAACCATTTACGTGTGAAACTTGCGCGTATAAATGCGCACATAAGGCGGATTTTGATGCACACTTAAGAACGCACACGGGAGAAAAACCTTTCAGCTGCGAAATTTGTGACTTTACATGTGCAAAGAAAGGATACTTAAAAATTCATTTCGCCACTCATTCGGGCGAGAAGCCCTTCAGATGTGCAATTTGTGACTTCAAATCTGTGAGAAAGGCAGCTTTAAAAAATCATATAAGGACTCATTCGGGAGTGAAACCTTTTGTTTGCGAAACTTGCGGCCACAAATGTACTATGAAGGATAGTTTAAAAAAGCATTTAAAAAGTCACACTGGCGAGAAACTTTTTACGTGTGGTCAGTGCGACTATAAAAGCGCATATAAAACAAGTTTGAATCGGCATTTTATGATTCACACAGGGGAGAAACCTTTCGAGTGTACGTTCTGCGATTATAAATGCGCACGAAAAGGAGATTACACTATTCATTTACGAACGCATACAGGGGAAAAGCCGTTCACGTGTGAAGTTTGCGGCTATGAATGTGCTCAAAAGGGATATTTAAGGGTTCATTTAAAAACTCATACCGGTGAGAAACCGTACACTTGTAAATTCTGCTCCTATAAAAGTATAAAGAAGGCGGCTTTGAAGATTCATTTAAGGACTCACACGGGCGAGAAACCATATGTGTGTGAAATGTGCGGCCGCGAATTTATTTCCAAAGTCAGTTTGAAAAGACATTTAATACGTCACACTGGCGAGAAACCGTTTCGGTGTGAAATTTGTGACTACCGATTTACTTTCAAAATACAATTGAAAAGTCACTTGATAATTCATACTGGCGAAAGACCGTTTACGTGTGACGTTTGTAATTATAAATTTGCTCGCAAGGGAAGTCTACAAGTCCATTATAGAACTCATACTGGAGAAAAGCCGTATGCGTGTGATATTTGTAGCTATGAAGGTCGACAAAAGAAAGATATAGATAGACATGTATTAACTCATTCAATAGCTGTCAGTGGAAAGAGCGCTTCTTCTGGATAA
Protein Sequence
MVRTSNLGQNKSFFFTLDFKNSKISKWRTNFLWLFLFQEASTHSINNVKIKIEEEVEIKLEDLHHSIDIKEENSNLPSEPLGLCSVEKPFNCKICDFKCEHQDKFKINVCTHSGDKPFLCQICNFKFARKGDLKSHLGTHADKKPFICEFCNYQCGSERRFKSHLKTDHPDEKLFMCEICNLKFARKGELKPHLITHAEYKPFTCELCDFKSGYRKNLSRHLKIHTGEKPFTCETCAYKCAHKADFDAHLRTHTGEKPFSCEICDFTCAKKGYLKIHFATHSGEKPFRCAICDFKSVRKAALKNHIRTHSGVKPFVCETCGHKCTMKDSLKKHLKSHTGEKLFTCGQCDYKSAYKTSLNRHFMIHTGEKPFECTFCDYKCARKGDYTIHLRTHTGEKPFTCEVCGYECAQKGYLRVHLKTHTGEKPYTCKFCSYKSIKKAALKIHLRTHTGEKPYVCEMCGREFISKVSLKRHLIRHTGEKPFRCEICDYRFTFKIQLKSHLIIHTGERPFTCDVCNYKFARKGSLQVHYRTHTGEKPYACDICSYEGRQKKDIDRHVLTHSIAVSGKSASSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-