Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:3410124-3412005[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.6e-07 1e-05 26.5 1.4 1 23 110 132 110 132 0.99

2 15 0.00046 0.013 16.7 2.9 1 23 138 160 138 160 0.98

3 15 1e-05 0.00029 21.9 3.5 1 23 166 188 166 188 0.99

4 15 0.014 0.39 12.1 2.3 1 23 194 216 194 216 0.97

5 15 0.043 1.2 10.5 4.8 1 23 222 244 222 244 0.99

6 15 0.0014 0.039 15.2 7.1 1 23 250 272 250 272 0.98

7 15 0.00028 0.008 17.4 1.6 1 23 278 300 278 300 0.98

8 15 0.0076 0.22 12.9 1.3 1 23 306 328 306 328 0.99

9 15 0.00015 0.0044 18.2 7.9 1 23 334 356 334 356 0.98

10 15 0.0038 0.11 13.9 1.5 2 23 363 384 362 384 0.97

11 15 0.098 2.8 9.4 4.8 1 23 390 413 390 413 0.96

12 15 6.7e-05 0.0019 19.4 3.7 1 23 419 441 419 441 0.99

13 15 0.00028 0.008 17.4 1.4 1 23 447 469 447 469 0.98

14 15 5.6e-06 0.00016 22.8 7.0 1 23 475 497 475 497 0.99

15 15 1e-05 0.00029 21.9 2.8 1 23 503 525 503 525 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.6e-07	1e-05	26.5	1.4	1	23	110	132	110	132	0.99
2	15	0.00046	0.013	16.7	2.9	1	23	138	160	138	160	0.98
3	15	1e-05	0.00029	21.9	3.5	1	23	166	188	166	188	0.99
4	15	0.014	0.39	12.1	2.3	1	23	194	216	194	216	0.97
5	15	0.043	1.2	10.5	4.8	1	23	222	244	222	244	0.99
6	15	0.0014	0.039	15.2	7.1	1	23	250	272	250	272	0.98
7	15	0.00028	0.008	17.4	1.6	1	23	278	300	278	300	0.98
8	15	0.0076	0.22	12.9	1.3	1	23	306	328	306	328	0.99
9	15	0.00015	0.0044	18.2	7.9	1	23	334	356	334	356	0.98
10	15	0.0038	0.11	13.9	1.5	2	23	363	384	362	384	0.97
11	15	0.098	2.8	9.4	4.8	1	23	390	413	390	413	0.96
12	15	6.7e-05	0.0019	19.4	3.7	1	23	419	441	419	441	0.99
13	15	0.00028	0.008	17.4	1.4	1	23	447	469	447	469	0.98
14	15	5.6e-06	0.00016	22.8	7.0	1	23	475	497	475	497	0.99
15	15	1e-05	0.00029	21.9	2.8	1	23	503	525	503	525	0.98

Sequence Information

Coding Sequence: ATGGATAAGTTTATACTTTTGACAAAAATCGTGAAATTTGAAGAAGCCATCGATGGCGACGAAATGGAGGTCACGGATGCCGAACTTGAAGGCTTGCACCACTCCATAGATATTAAGGAAGAAGATCCGAATTTAGATTATCAAGTGGATAGCGATGAGGATACTCCATGGCATTCAAATAACCACTCCCAAATTAAGACGGAAGAAATAGAATTGAAGTTGGAAGATTTGCACCATCGTTCCTTTAAGATTCAGGACGACACCTCAGTTCACCGCTGCAAAACAAAAACAAGTGAAATCTCCAAGAATAACTCGGGTAAGAAACGGTTTAAGTGTGAAATTTGTGACTACAAATTTGCACAGAAGGGAAATTTAAAAAGTCATTTAAAAACTCATCGAGGCGAGAAAGAGTTCAAGTGTGAAATTTGTGACTTTAAATGTGTGCGAAGGGAAAATTTAAAAATTCATTTTATAACTCATACAGGCGAGAAAGCGTTCAAATGTGACGTTTGTGACTACACTTATGCACACAAGCAAAGTTTAAACCGTCATTTGAAAACTCACAAAGGCGAGAAACCACATATGTGTGAAATTTGTGCCTACAAATGTGCACAAAAGGTAACGCTAATAGACCATTTAAAAACTCACACAGGCGAAAAAGCTTTCAAGTGTGAGATTTGTGACTACGAATGTGCAAGGAAGGCGAGGTTAAAATGTCATATAAAAACTCATACAGGAGAGAAACCATTCCAGTGTGAAATTTGCGAGTACAAATGTGCACATAAAAGCACACTAAAACATCATTTAAAAATTCATACTGGCGAGAAATCGTTTGTATGTGAAATTTGTGGCTACAAATGTGCACGAAACCGAGTTTTAAAAGATCATTTAAAAACACACACAGGCGAGAAACCTTTCAAGTGTGAAAGTTGCGACTACGAATCTGCACTTAAGCAAAGTTTAAAAAAACATGTAAAAACTCACCTGGACGAGAAAGCGTTCAAGTGTGAAGTTTGTCATCACCAATTTTCACGAAAGGGACATTTAAAAAACCATTTAAAAATTCATGCAGTCGAGAAAGTGCTGAAATGCGAAATTTGTGATTACAAAAGTGCACGGAAGGAACGTTTAAAAAATCATTCAAAAACTCACACAAGCGAGGAATCGTTCAAGTGTGAAATTTGTGAATACAAATCCACACAAAAGCGACATGTAAAAAATCATTTTTTAAAAACTCATACGGAGCAGAAACCTTTCAAGTGTGAAATTTGCAAATTCCAATTTGGACGCAAGCAAAGTTTAAAAAAACATTTAAAAACGCATACAGGCGAAAAAGAGTTCGAGTGTGAAATTTGTGACTTCAAATGTGCACTAAAGGGAAATTTAAAAATTCATTTAAAAACTCATACCGGTGAGAAAGCGTTCAAATGTGAAATTTGTGATCACAAATTTACACGAAAAGAACATTTAAAAAATCATTTAAAAACTCATACGGGCGAGAAAGCGTTCGAGTGTGAAATTTGTGACTATAAATGTGCACGAAAGGATTCTTTAAAAAAGCATTTACAAACTCATACGGGCGCTCGTTGA
Protein Sequence: MDKFILLTKIVKFEEAIDGDEMEVTDAELEGLHHSIDIKEEDPNLDYQVDSDEDTPWHSNNHSQIKTEEIELKLEDLHHRSFKIQDDTSVHRCKTKTSEISKNNSGKKRFKCEICDYKFAQKGNLKSHLKTHRGEKEFKCEICDFKCVRRENLKIHFITHTGEKAFKCDVCDYTYAHKQSLNRHLKTHKGEKPHMCEICAYKCAQKVTLIDHLKTHTGEKAFKCEICDYECARKARLKCHIKTHTGEKPFQCEICEYKCAHKSTLKHHLKIHTGEKSFVCEICGYKCARNRVLKDHLKTHTGEKPFKCESCDYESALKQSLKKHVKTHLDEKAFKCEVCHHQFSRKGHLKNHLKIHAVEKVLKCEICDYKSARKERLKNHSKTHTSEESFKCEICEYKSTQKRHVKNHFLKTHTEQKPFKCEICKFQFGRKQSLKKHLKTHTGEKEFECEICDFKCALKGNLKIHLKTHTGEKAFKCEICDHKFTRKEHLKNHLKTHTGEKAFECEICDYKCARKDSLKKHLQTHTGAR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -