Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:16980972-16982555[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00097 0.028 15.7 3.5 1 23 79 101 79 101 0.98

2 16 6.6e-05 0.0019 19.4 1.8 1 23 107 129 107 129 0.97

3 16 0.00074 0.022 16.1 6.3 1 23 135 157 135 157 0.98

4 16 0.0063 0.18 13.1 1.2 1 23 163 185 163 185 0.97

5 16 0.00022 0.0063 17.7 5.6 1 23 191 213 191 213 0.98

6 16 0.00036 0.011 17.0 5.5 1 23 219 241 219 241 0.97

7 16 0.009 0.26 12.7 5.4 1 23 247 269 247 269 0.98

8 16 0.00075 0.022 16.0 2.6 1 23 275 297 275 297 0.97

9 16 0.0013 0.037 15.3 6.5 1 23 303 325 303 325 0.98

10 16 0.00027 0.0079 17.4 1.2 1 23 331 353 331 353 0.97

11 16 7.1e-05 0.0021 19.3 5.2 1 23 359 381 359 381 0.98

12 16 2.2e-05 0.00063 20.9 5.4 1 23 387 409 387 409 0.99

13 16 0.0011 0.031 15.6 1.3 1 23 415 437 415 437 0.97

14 16 0.00011 0.0031 18.7 1.6 1 23 443 465 443 465 0.98

15 16 0.00059 0.017 16.4 3.7 3 23 473 493 471 493 0.98

16 16 0.0029 0.083 14.2 7.4 1 23 499 521 499 521 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00097	0.028	15.7	3.5	1	23	79	101	79	101	0.98
2	16	6.6e-05	0.0019	19.4	1.8	1	23	107	129	107	129	0.97
3	16	0.00074	0.022	16.1	6.3	1	23	135	157	135	157	0.98
4	16	0.0063	0.18	13.1	1.2	1	23	163	185	163	185	0.97
5	16	0.00022	0.0063	17.7	5.6	1	23	191	213	191	213	0.98
6	16	0.00036	0.011	17.0	5.5	1	23	219	241	219	241	0.97
7	16	0.009	0.26	12.7	5.4	1	23	247	269	247	269	0.98
8	16	0.00075	0.022	16.0	2.6	1	23	275	297	275	297	0.97
9	16	0.0013	0.037	15.3	6.5	1	23	303	325	303	325	0.98
10	16	0.00027	0.0079	17.4	1.2	1	23	331	353	331	353	0.97
11	16	7.1e-05	0.0021	19.3	5.2	1	23	359	381	359	381	0.98
12	16	2.2e-05	0.00063	20.9	5.4	1	23	387	409	387	409	0.99
13	16	0.0011	0.031	15.6	1.3	1	23	415	437	415	437	0.97
14	16	0.00011	0.0031	18.7	1.6	1	23	443	465	443	465	0.98
15	16	0.00059	0.017	16.4	3.7	3	23	473	493	471	493	0.98
16	16	0.0029	0.083	14.2	7.4	1	23	499	521	499	521	0.97

Sequence Information

Coding Sequence: ATGGCTCAAGTGCTACCACCGGAAGAGTTACAAATAAAGGAGGACATTGGTATACTTTTGGAAGCTCCATATTACAATAATTTAAGTAGCTGTCACGCAATTAAAACGGAGAAGGTGGAAGACGTCAAATTTAATTTAGAAGATTTGCATCATTCGATTGACGTTAAAGAGGAGAGTAAAACTGAAGCATTAACTCAAGAAGAATCTGAAAGAAAATATAACATTTTGAAATTATTTGAGTGTGCCTTCTGCGGTTGTGCAGTTACAAGCAAGCACTCTTTAAAATTGCATTTAAGAACTCATACAGGTGAGAAACCGTTCGCGTGCGAAATTTGCGATTATAAATGTGCGTATAAAGCGAGTTTAAACCGGCATTTAAAAACTCACACCGGCGAGAAACCTTTTTCTTGTCAAATCTGTGACTATAAGTGTACACATAAATCAAGTTTGACAGAACATTTGAAAAATCACACTGGCGAGAAGCCATTCGCGTGTGTGTTTTGTAACTATAAATGTATTCGGGCGGGAAGTTTAAAGGAGCATTTAAAAATTCATACCGGTGAGAAGCCCTTTGCATGTGACATCTGTGAGTATACATGTGCGCACAGGTCACATTTAAAGGAACATTTAAGAACGCACACAGGCGAGAAGCCGTTTGCGTGTGAAGTTTGTGATTATAAATGTTCCCGTAAATCACATTTAAACATTCACTTTAAAACGCACACTGGTGAAAAGCCGTTCAGTTGCGGAATTTGTAACCATAAATGTGCGTATAAGTCAGATTTAGTCAAACATTTTAAAACACACACCGGCGAGAAACCATTCGCGTGTGAAATTTGTGACTATAAATGTGCATATAAAGCTAGTTTAAATAAGCACTTTAAAACGCATACCGGCGAAAAACCGTTTTCGTGTGACTTTTGCGACTATAAATGTACACATAAATCAAGTTTAAAAGAGCACTTAAAAATTCATACTGGCGAAAAGCCTTTTGCTTGTGAAATCTGCAATTATAAATGTACCCGTATAGGAAACTTGAGAGAACATTTAAAAGTTCACACTGGTGAAAAACCGTTCGTATGTGAAATTTGTGGTTATAAGTGCGCACATAAATCACATTTAAATTCCCACTTAAAAATCCACACCGGTGAAAAACCGTACACATGTGAAATCTGTCACCATAAATTTGCACAAAAATCGCAATTGAACATGCACTTAAAAACTCACACGGGTGAAAAACCATTCGCTTGTAAACTTTGTGACTATAGGTGTGCTCTTAAAGCAAGTTTAAATGCGCACTTGAAGACGCACTCCGGCGAGAAACCTTTTGCGTGTGACATCTGCAACTATAAATGCGTCAATACCGGAAACTTAAAAGAACATTTACGAACTCACACCGGTGAAAAACCGTTCGGGTGTGAACTTTGTGACTATAAATGTGCGCAAAAATCGCATTTGAAAGTACACTTACAAACCCACACCGGTGAAAAGCCGTTCGCGTGTAAAATTTGTAACTATCACTGTTCCCGTAAATTCAGTTTAAAAATGCATTTAAAAACGCACACAACAAAAGTTGGGGGTTAA
Protein Sequence: MAQVLPPEELQIKEDIGILLEAPYYNNLSSCHAIKTEKVEDVKFNLEDLHHSIDVKEESKTEALTQEESERKYNILKLFECAFCGCAVTSKHSLKLHLRTHTGEKPFACEICDYKCAYKASLNRHLKTHTGEKPFSCQICDYKCTHKSSLTEHLKNHTGEKPFACVFCNYKCIRAGSLKEHLKIHTGEKPFACDICEYTCAHRSHLKEHLRTHTGEKPFACEVCDYKCSRKSHLNIHFKTHTGEKPFSCGICNHKCAYKSDLVKHFKTHTGEKPFACEICDYKCAYKASLNKHFKTHTGEKPFSCDFCDYKCTHKSSLKEHLKIHTGEKPFACEICNYKCTRIGNLREHLKVHTGEKPFVCEICGYKCAHKSHLNSHLKIHTGEKPYTCEICHHKFAQKSQLNMHLKTHTGEKPFACKLCDYRCALKASLNAHLKTHSGEKPFACDICNYKCVNTGNLKEHLRTHTGEKPFGCELCDYKCAQKSHLKVHLQTHTGEKPFACKICNYHCSRKFSLKMHLKTHTTKVGG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -