Rful009838.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:14286268-14287734[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.028 0.81 11.1 1.2 1 23 62 84 62 84 0.98 2 15 2.5e-05 0.00074 20.7 1.7 1 23 90 112 90 112 0.98 3 15 1.4e-05 0.00041 21.5 3.9 1 23 118 140 118 140 0.98 4 15 0.0032 0.093 14.1 1.5 1 23 146 168 146 168 0.98 5 15 0.00017 0.005 18.1 3.3 1 23 174 196 174 196 0.98 6 15 0.00014 0.004 18.4 3.7 1 23 202 224 202 224 0.97 7 15 0.00017 0.0049 18.1 2.1 1 23 230 252 230 252 0.98 8 15 0.0014 0.039 15.3 2.7 1 23 258 280 258 280 0.98 9 15 9.8e-05 0.0028 18.8 1.5 1 23 286 308 286 308 0.98 10 15 3.1e-05 0.00091 20.4 0.9 2 23 315 336 314 336 0.97 11 15 1.3e-05 0.00039 21.6 1.2 1 23 342 364 342 364 0.98 12 15 7.6e-05 0.0022 19.2 3.1 1 23 370 392 370 392 0.97 13 15 6.1e-05 0.0018 19.5 1.6 1 23 398 420 398 420 0.97 14 15 0.0012 0.033 15.5 2.8 1 23 426 448 426 448 0.97 15 15 7.6e-05 0.0022 19.2 3.1 1 23 454 476 454 476 0.97
Sequence Information
- Coding Sequence
- ATGGAACGGATCGACCAAGTATCGCAACCTCTCCATAATTCTAGTAGCCATGAAATTAAAGTAGAAGATGTGAAGTTTAATTTGGAAGATTTACATCACTCGATAGACATCAAAGACGAGAGCGAGAGCGATGCTGAACAACTACCGCTGGAGAAACCCGTAAGAAAAACTAAAAACTCAAATTTTATTTGTCAGTTTTGTGATTATAAAAACGCAAGGAAATCAAGATTAATAATACATTTAAGAACTCACACAGGTGAGAAACCTTTTGTTTGTGAGATTTGTGACTATAAATGTGCACGCAGAGAAGGTTTAAAAACGCATTTAAGAACTCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTAACTATAAATGTACAAGAAGAGTAAATTTAAAAAAACATTTAAGAACTCACACAGGTGAGAAACCTTTTGTTTGTGAGATTTGTGACTATAAATGCGCAGAAAAAAGAGTTTTAAAAGAACATTTAAAAACTCACACAGGTGAGAAACCTTTTGTTTGTGAGATTTGTGACTATAAATGTACACAAGGAACAAAGTTAAAAAGACATTTAAGAACTCACACAGGTGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCAAGAAGAGAACATTTAAAAGAACATTTAAAAACTCACACAGGTGAGAAACCTTTTGTTTGTGAGATTTGTGACTATAAATGTGCACAAAGAATAACTTTAAAAAACCATTTAAAAACTCACACAGGTGAGAAACCTTTTACTTGTGTGATTTGTGACTATAAATGTGTCCAAAAAGTAAATATAAAACAACATTTAAAAACTCACACAGGTGAGAAACCTTTTTCTTGTGGGATTTGTGACTATAAATGTGCACAAAAGGGACAGTTAAAATTACATTTAATGACTCACACAGATGAGAAACCTCTTGTTTGTGAGATTTGTGACTATAAATGTGTACGAAGAGGAGATTTAAAAATACATTTAAGAACTCACACAGGTGAGAAACCTTTTGCATGTGAGATTTGTGACTATAAATGTGCACAAAGAGGAGCTTTAAAAAGACATTTAAGAACTCACACAGGCGCGAAACTTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACAAAAGGGACATTTAAAAATACATTTAAAAACTCACACAGGCGCAAAACTTTTTGCTTGTAAGATTTGTGACTATAAATGTGTACGAAGAGGAGATTTAAAAATACATTTAAACACTCACACAGGTGAGAAACCTTTTGCTTGTGAGATTTGTGACCATAAAAGTGCACACAGGTCAGCTTTTAAAATACATTTAAGAACTCACACAGGTGCGAAACTTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACAAAAGGGACATTTAAAAATACATTTAAAAACTCACATAGGTGAGAAACCTTTTGCTTGTGAGATTTGTGACTAA
- Protein Sequence
- MERIDQVSQPLHNSSSHEIKVEDVKFNLEDLHHSIDIKDESESDAEQLPLEKPVRKTKNSNFICQFCDYKNARKSRLIIHLRTHTGEKPFVCEICDYKCARREGLKTHLRTHTGEKPFACEICNYKCTRRVNLKKHLRTHTGEKPFVCEICDYKCAEKRVLKEHLKTHTGEKPFVCEICDYKCTQGTKLKRHLRTHTGEKPFACEICDYKCARREHLKEHLKTHTGEKPFVCEICDYKCAQRITLKNHLKTHTGEKPFTCVICDYKCVQKVNIKQHLKTHTGEKPFSCGICDYKCAQKGQLKLHLMTHTDEKPLVCEICDYKCVRRGDLKIHLRTHTGEKPFACEICDYKCAQRGALKRHLRTHTGAKLFACEICDYKCAQKGHLKIHLKTHTGAKLFACKICDYKCVRRGDLKIHLNTHTGEKPFACEICDHKSAHRSAFKIHLRTHTGAKLFACEICDYKCAQKGHLKIHLKTHIGEKPFACEICD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -