Rful025151.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996555.1:37269206-37280864[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 5.2e-05 0.0015 19.7 1.7 1 23 148 170 148 170 0.99
2 14 0.0042 0.12 13.7 5.7 2 23 177 198 177 198 0.97
3 14 6.4e-05 0.0018 19.4 3.0 1 23 208 230 208 230 0.96
4 14 0.00079 0.023 16.0 4.9 2 23 302 324 301 324 0.97
5 14 0.0038 0.11 13.8 5.8 1 23 395 417 395 417 0.97
6 14 8.1e-05 0.0023 19.1 1.0 1 23 423 446 423 446 0.92
7 14 6.7e-06 0.00019 22.5 1.5 1 23 451 473 451 473 0.98
8 14 5e-05 0.0014 19.8 2.8 2 23 484 505 483 505 0.97
9 14 7.6e-07 2.2e-05 25.5 1.1 1 23 512 534 512 534 0.97
10 14 9e-05 0.0026 19.0 1.6 3 23 546 566 544 566 0.92
11 14 0.0018 0.053 14.8 4.8 1 23 572 594 572 594 0.99
12 14 3.7e-05 0.0011 20.2 1.8 1 23 600 622 600 622 0.96
13 14 5.7e-06 0.00016 22.7 0.2 1 23 628 650 628 650 0.98
14 14 0.0019 0.055 14.8 0.1 1 23 656 680 656 680 0.92

Sequence Information

Coding Sequence
ATGATTAATAAAGATACTGCGCTGGTGATGCAAAAAATATGTCGTTCTTGCATGTGCGAGGGCGACGAAATGCGTAGCGTGTTCGCTACTAAAAATTTACTAGAAGGACAAACTTCAAATCTTGCTGATATGTTGATGGCCTGCACTTCTATTCAAGTAACATCAGACGATGGACTACCCGTACAGTTGTGTTTAACTTGCGAAACAAAACTGGACACTGCATTTGAGTTTAAACAGCAGTGCGAAAAAACCGATGTAACTCTGCGGGAGATTACTAATCAACCTGTTCCCAAACGTTCGATAAAGCAGGAACGATTGGATATAGTAATACAACCAGATTTAGTAAACACTTCGGATTTATATAGTAACGCAGGAGATTCGGATGACAGTACTCGAGAATCGAGTGTTAAACAAACAAAGAACTCAAAAGATTCTACTACTTTTACATGTGGTTATTGTCAAAAAGTCCTACGTACAAAGAAAGGTCTAACTATCCATCAACGTCGTCATACTGGCGAAAAGTTGCGTTCCTGCCATCTTTGCAATGCAAATTTTACTCGAACTAATCATTTAAGAAGGCATCTTGAAACGCACAATCGTGTCAGGCAAGGAGTTACCTCCCATCCTTGTAATGAATGTGGTGAGACTTTCTCTAAGGCCTATCATTTAGTTAAGCATAAAAAGGAACATAAGTTAGGAAGTGTTAGTATAAAGAGGGAAATATCCATCGATGGAGACGATTCTCAGATAATTGATGATGCAGATGATGGGAACTTTGAAATTGAGGAAGAAGGAAATGAAAATGAGCCCAGTACTACAAAAGATAATTCTTTAAATGATATTGAACTTGATGAGGATGGTAAACCTAAAATTTTAAGAACAGATAGAGAGAAAAAGGTAATGCAATGCGAGTTTTGCGATCGTAAATTTAAGTACAGGAAGAGTTTCATGCACCACATGCAAACAGAGCATGGTATGTCGGACGAAAGTGACGTACCGCTTAGTACCTATATTACAAAACCTGATGATAGTATAAAAGATGAAATGAATGAGAATAATGCAGGTGCAGAAAATATTACTGAAACGTTTGATGCCAAAGATTTTAATCCGGATGGTTCAATTGATGGGATCGAAGGATTAGATGACACCGATTTGTTGATTTCTGCAAATAACAGAAAAATGCATACTTGTCATGTTTGTGAATCTAAATTTGCTAGAGCAAATCATTTAACGAGACATATGACTTTGCATAGGGCAATTTTAGTTCATAAATGTAATAAATGTGATAAAGCTTTTGCCACTCCGGAATATTTAGCAAAGCATAATCAGGAAGATCATATTGATAAACCTTACGTTTGTAGTAAGTGTAATAAGCCATTTAGTAGAGGTGAACATCTTATTCGTCATTTAAAAGTTCATGAAACAAACAGCGAACAAGAAGAAAATCTCAAATGCTCTATTTGTGAGAAAATTTTCACCAGAACCGATCACTTATCGAGGCATACTAAAATTCATTTACAACAAGATAAGAGGCACGTTTGTTCTGAATGTGGGAAAGCTTTTAATAGAATAGATAATTTAAAAACACATCAAAGAATTCATGCAGGACTTAAAGATAACTCGAGGCTTCATCTGTGTATATATTGTGGAAAGGAGTTTAACAATTCCAGTAACATGATTGTTCACATGCGAAGACATACTGGTGAGAGGCCTTATAAATGTACCATATGTGAAAAAGGTTTTCCAAGATCTCATGATCTGAAATGTCATGAACGTACACATTCGGGAGAAAAGCCATATTTATGTACGCTTTGTGGTAAATCTTTCAATAAGAGTAATAAATTGTTACGACACACCCGAGTCCATACAGGCGAAAGACCATACGCTTGTAATTTATGTCCACGAGCATTCACCCAATCAAACGATCTTGCCCTACACATGCGTAGGCATACAGGTGCCAGGCCATATGCTTGTGGTATGTGCCCATCACGTTTTATACAATCTGGACAACTGAAAGCACATAGGCGATCATCTGGTCATTGGATGGAAACACAACCTGACTTAAAGGGAGGTCATAGGGTAGAATTAGTTACGCCAATTACGAATCCTGCTCCTATCAAATTTAAAACTCACGGTAAAAACTTACCAAAATTAAAACCTGAAGATATGGATATGGAAGACCTTAAAGAGCCTCGAATTTTAAATCATACAGTGGGCATTATGGGAAATATTAGCATCCAAGGTGATGCTTCTCATGTGGATAATAGCCAACCAATAATATTAGAAAGTACGAAATTATTCCAACAATTCCATAACGCAGGTTTCATGGGTCTGTCATCTGTAATCAATGCAGCAAGTCAAGCAGCAACTTGTTCAGATATTAAGGGTGAAAGTCAAAACTTTACAATTGCACATGTGGTTCAAGATGCAACTGAATCGGATGCAGATAAAATTGAAATTGTTCATAGTAATGACGTTACGTATTCTACAGTGAGTGCTGCTACTTATTTTCCCAGTCCCGATCGTCATAATTATCAAAATTATGGTTAA
Protein Sequence
MINKDTALVMQKICRSCMCEGDEMRSVFATKNLLEGQTSNLADMLMACTSIQVTSDDGLPVQLCLTCETKLDTAFEFKQQCEKTDVTLREITNQPVPKRSIKQERLDIVIQPDLVNTSDLYSNAGDSDDSTRESSVKQTKNSKDSTTFTCGYCQKVLRTKKGLTIHQRRHTGEKLRSCHLCNANFTRTNHLRRHLETHNRVRQGVTSHPCNECGETFSKAYHLVKHKKEHKLGSVSIKREISIDGDDSQIIDDADDGNFEIEEEGNENEPSTTKDNSLNDIELDEDGKPKILRTDREKKVMQCEFCDRKFKYRKSFMHHMQTEHGMSDESDVPLSTYITKPDDSIKDEMNENNAGAENITETFDAKDFNPDGSIDGIEGLDDTDLLISANNRKMHTCHVCESKFARANHLTRHMTLHRAILVHKCNKCDKAFATPEYLAKHNQEDHIDKPYVCSKCNKPFSRGEHLIRHLKVHETNSEQEENLKCSICEKIFTRTDHLSRHTKIHLQQDKRHVCSECGKAFNRIDNLKTHQRIHAGLKDNSRLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCTICEKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYACNLCPRAFTQSNDLALHMRRHTGARPYACGMCPSRFIQSGQLKAHRRSSGHWMETQPDLKGGHRVELVTPITNPAPIKFKTHGKNLPKLKPEDMDMEDLKEPRILNHTVGIMGNISIQGDASHVDNSQPIILESTKLFQQFHNAGFMGLSSVINAASQAATCSDIKGESQNFTIAHVVQDATESDADKIEIVHSNDVTYSTVSAATYFPSPDRHNYQNYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00271539;
90% Identity
iTF_00271539;
80% Identity
-