Rful005842.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:107600552-107603336[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00039 0.011 17.0 0.7 1 23 96 118 96 118 0.97 2 19 0.0038 0.11 13.8 2.7 1 23 124 146 124 146 0.98 3 19 0.00064 0.018 16.3 1.5 1 23 152 174 152 174 0.98 4 19 0.0056 0.16 13.3 4.8 1 23 180 202 180 202 0.97 5 19 2.6e-05 0.00075 20.6 3.0 1 23 207 229 207 229 0.98 6 19 0.0026 0.075 14.4 4.9 1 23 235 257 235 257 0.96 7 19 0.6 17 6.9 2.3 1 23 263 285 263 285 0.97 8 19 0.005 0.14 13.5 1.8 1 23 291 313 291 313 0.97 9 19 2.4e-05 0.0007 20.7 0.9 1 23 319 341 319 341 0.98 10 19 0.0076 0.22 12.9 4.1 2 23 347 369 346 369 0.96 11 19 6.9e-06 0.0002 22.5 0.3 1 23 375 397 375 397 0.99 12 19 0.01 0.29 12.5 5.7 1 23 403 425 403 425 0.97 13 19 0.00033 0.0096 17.2 0.6 3 23 433 454 431 454 0.96 14 19 0.0001 0.003 18.8 0.3 1 23 460 482 460 482 0.99 15 19 0.00013 0.0037 18.5 1.2 1 23 488 510 488 510 0.98 16 19 0.012 0.34 12.3 0.9 1 23 516 538 516 538 0.97 17 19 0.00011 0.0033 18.7 0.6 1 23 545 567 545 567 0.97 18 19 0.00028 0.0082 17.4 3.2 1 23 573 595 573 595 0.98 19 19 0.1 3 9.3 2.1 1 23 601 623 601 623 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGCAAACATGAAATTAAAACCGAAGTAGTGGAATATGTAGAAATCAAATCAGAATGTTTGAAGAATCCAGAAGAATTTACTATTGTTTCGAACGCCTATTCGCCTTCGACACAAATTAAAGTTGAAGCGACTGAGCCCACAGAATTTAGTTTGGAGGATTTACATCACTCAATTGACATCAAAGAAGAGCCCCCTTTTTTGGAAAGTCAAGAAACATCACTGTCTGATGTCCTCAATGAAAAATTGTGTAATAAACCAAAAATAGAACCGAAAAACTTATTTGCTTGTGAAATGTGCAACTATCAAACTGTGTTCAAGGGAAACCTTAAAGTGCATTTAAGAACTCATACAGGGGAGAAACCGTTTACTTGCGGATACTGCTTTAACAAATTTTCGCATCTAGGAAGTTTGAATTTGCATTTAAAAATTCACGCTGGTGAAAAACCTTACGAGTGTAAAATTTGCGGTTATAAGTGTATACAAAAAGGAAATATGGTCGTACACGAGAAGAAGCATACTAACGAAAAAGCATTTGCATGTAACATTTGTGAGTACAAATGCTCCCACCGAAGAAGTTTAACGGCTCACTTTAGAATTCACACGGGTGAAAAATTCAAATGCGAGTACTGCGATTATGAAACCACACACAAATCAAGTTTGAAAGTTCACATGGTAACTCATACAAACGAGGAACCTTTCCTCTGCAACATCTGTGACTACAAGTGCGTCAAGAAAAGAAACTTTAAGTTGCACTTAAGAACGCACGATGGCAAAAAATTATTTGTTTGTGCTTTTTGTGACTCGAAGTTTCTGCACAAAGTAAGTTTGAAGCTGCACTTAAAACTTCACGGTGATGATAAGCCGTTTGCGTGTGAAACTTGTGAGTGTAAGTTTTCCCTAGAAAGCGACCTGACACTTCATTTAAAAAGTCATACTGCGAAAAAAGTATTTGTATGTGAAGAATGTGACAGTAAATTTTCGAAAAAGCGAGAATTAAATGCGCATTTAAAAACTCACGACGTGAAACCACTTAAGTGTGAATCTTGTGGTTATATGTGTGCACATAAAGGAAATATGAAGAGACATTTGTTGAAAACCCATTCCAATGTGAAGCCCTTCGAGTGCGAAATCTGTGATTACAGAAGTGCCCAAAAAGGGAATTTGAAGGTACACTTAAGAACCCATACCAAAGAGAAACCATTTTGTTGTGAAATTTGCAACTGCAGATTTTCTTATAAAAGAAGTTTACAAGAGCACGGAAAAGTTCACACCGGGGAGAAACCATTTGGGTGTGGTCAGTGTGACTATAAATCTACACAAAAGTCAAATTTGAAAAAGCATTTACTAGTTGCCCATTCACTGGAAAAACCGTTCCAGTGCGAAATCTGTGATTACAAAAGCGCACTTAAAGTTAATTTAAAGCTGCACATGAGAGTGCACACGGACGATAAACCATTTGTTTGTGAAACGTGTAACTACAAATTTGCGTATAAAAGGAGTTTAAATGAGCATTTAAAAGTCCACACCGGGGAAAAGCCGTTTGCTTGTGACTTTTGTGACCACAAATCGGCACAAATAGGAAATTTGAAAGTACATCTTAAATCTCACACAGTGTCCGAGAAAGCATTCGCGTGTGAAATCTGCAACGTCAAATTTACAAAAAAAGCAACTCTGAAGATGCATTTAAAAATTCATCAGGGTGTGAAGCCGCATCAGTGTTCAATATGCAAATACAGATCCACACTGAAAGGAAACTTAACGTTGCATATGCGAACCCACACAGGCGAGAAGCCATACGCGTGCCAATTTTGTGACTACAAATGCGCACGAAGAGGAATTTTAAAGACGCATTTAAAAATTCACAGTAGGGATCAGAACGTCTGA
- Protein Sequence
- MESKHEIKTEVVEYVEIKSECLKNPEEFTIVSNAYSPSTQIKVEATEPTEFSLEDLHHSIDIKEEPPFLESQETSLSDVLNEKLCNKPKIEPKNLFACEMCNYQTVFKGNLKVHLRTHTGEKPFTCGYCFNKFSHLGSLNLHLKIHAGEKPYECKICGYKCIQKGNMVVHEKKHTNEKAFACNICEYKCSHRRSLTAHFRIHTGEKFKCEYCDYETTHKSSLKVHMVTHTNEEPFLCNICDYKCVKKRNFKLHLRTHDGKKLFVCAFCDSKFLHKVSLKLHLKLHGDDKPFACETCECKFSLESDLTLHLKSHTAKKVFVCEECDSKFSKKRELNAHLKTHDVKPLKCESCGYMCAHKGNMKRHLLKTHSNVKPFECEICDYRSAQKGNLKVHLRTHTKEKPFCCEICNCRFSYKRSLQEHGKVHTGEKPFGCGQCDYKSTQKSNLKKHLLVAHSLEKPFQCEICDYKSALKVNLKLHMRVHTDDKPFVCETCNYKFAYKRSLNEHLKVHTGEKPFACDFCDHKSAQIGNLKVHLKSHTVSEKAFACEICNVKFTKKATLKMHLKIHQGVKPHQCSICKYRSTLKGNLTLHMRTHTGEKPYACQFCDYKCARRGILKTHLKIHSRDQNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294088;
- 90% Identity
- -
- 80% Identity
- -