Rful009315.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:6417426-6422678[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.4e-06 7.1e-05 23.9 1.9 1 23 91 113 91 113 0.98
2 16 0.00051 0.015 16.6 2.1 1 23 119 141 119 141 0.97
3 16 2.5e-05 0.00071 20.7 3.1 1 23 147 169 147 169 0.98
4 16 0.00034 0.01 17.1 1.5 1 23 176 198 176 198 0.98
5 16 0.0023 0.066 14.5 2.0 1 23 204 226 204 226 0.98
6 16 0.00063 0.018 16.3 6.4 1 23 232 254 232 254 0.99
7 16 0.00061 0.018 16.3 1.1 1 23 260 282 260 282 0.98
8 16 0.00095 0.027 15.7 6.4 1 23 288 310 288 310 0.98
9 16 0.0008 0.023 16.0 2.9 1 23 316 338 316 338 0.97
10 16 0.00013 0.0037 18.5 2.6 1 23 344 366 344 366 0.98
11 16 0.00097 0.028 15.7 0.5 1 23 372 394 372 394 0.97
12 16 7.1e-06 0.00021 22.4 2.2 1 23 400 422 400 422 0.98
13 16 0.018 0.51 11.8 1.3 2 23 429 450 428 450 0.95
14 16 0.00012 0.0034 18.6 3.0 1 23 456 478 456 478 0.97
15 16 3.1e-05 0.00091 20.4 1.4 1 23 484 506 484 506 0.98
16 16 7.2e-06 0.00021 22.4 2.2 1 23 512 534 512 534 0.99

Sequence Information

Coding Sequence
ATGGATGACGAAAGTTTATTGCCGACCAAGTTAGAAATGAGTTCGGCTGAAGGAGAGAGAGGTCTCGAGGACCAAACTACAACATCGAGCCAACAAGGAACGAATATCATTAAATCTCCATGCCATTCAAAGAGCTTCTCTCAAATCAAGATGGAAGAAATGGAATTCAAGTTGGAAGATTTGCATCATTCCATTGATATTAAGGAAGAGCCGTCTATTTTTGAATTTCAACCGAAGAGAGAATTTAAACCAGAAACAGACCGGAAATGGTTCGTATGTGAAATTTGTGGTTACAAATGTATAAACAAGGGAAATCTCAAAACCCATTTAAGAACTCATACCGGCGAAAAACCGTTCGCATGTGAATCTTGTGACTATAAATGTGCCCGGAAGGACAGTTTAAACGACCATTTAAAAACTCATACTGGTGAGAAATTGTTTACGTGTGGGATTTGTGACTGTAAATATGCACGTAAAAAAAATTTAAACAGACATTTAAAAATTCATACTGGGGAGGGGCCATTATTTGTATGTGAAATTTGTGACTACAAATCTACAGAAAAAGAAAAATTAAAAAGGCATTCGAGAACTCACACCGGCGAGAAACCGTTTATTTGTAAGATTTGCGATTACAAATGTGTAGAAAAGGGAAGATTAAACCTGCATTTGAGAACTCACAACGGCGAGAAACCATTTACATGTGAAATTTGTGATCACAAATGCGCAGAAAAGCACAGTTTAAAAATTCATATGAGAACGCATACTGGCGAGAAACCGTTTGTGTGTGACATTTGTGCCTACAAATGTGCACAAAAGCAAGGTTTAAAAGTTCATTTAAGAACTCACACCGGCGAGAAACCGTTCGAGTGCGAAATTTGTCACTATAAATGTGCACATAAAAGTGGTTTAAAAGACCATTTAAAAACCCACTCTGGTGAGAAATTGTTCATATGTAGGATTTGCGACTATAAATGTGCACGTAATGATCGTTTAAAGAGACATTTAAAAATTCATATTGGAGAGAGAGCATTTAAATGTGAAATTTGTGACTATAAATGTATCGAAAAGGAAAGTTTAAAAAGGCATTTGAAAATTCACACCGGCGAGAAACCGCATGTGTGTGAAATTTGCGACTACAAAAGTGCACTCAAAGGAGATTTAAACAGGCACTTGAAAATTCACACCAAGGAAACGCCGTTTGTGTGTGAACTTTGTGACAAAAAGTTTACGAGAAAGATGAATTTTAAACTTCATTTAAAAATTCACACCAGCAAGGTACCGTTAGTATGTAAAATTTGTGCTTACAAATGTGCAAATAAGGCAAGTTTAAAAAATCATGTATTTTCTCATACTGGTGCGAAACTTTTTGCCTGTGAAAAATGTGATTACAAATGCACAAGAAAGGGAACTTTAAAAAGGCATTTGTTAATTCACACCGGCGAGAAATCGTACGCGTGTGAGGTGTGCGACTATAAATGTGCACGCAAGGAAGAGTTAAAGAGACATTTAAAAATTCATACTGGGGAGAGACCATTTGAATGTGATATTTGTGACTATAAATGTATACAAAAGGGATCTTTAAATAGGCATTTGAGAACTCACACCGGCTAG
Protein Sequence
MDDESLLPTKLEMSSAEGERGLEDQTTTSSQQGTNIIKSPCHSKSFSQIKMEEMEFKLEDLHHSIDIKEEPSIFEFQPKREFKPETDRKWFVCEICGYKCINKGNLKTHLRTHTGEKPFACESCDYKCARKDSLNDHLKTHTGEKLFTCGICDCKYARKKNLNRHLKIHTGEGPLFVCEICDYKSTEKEKLKRHSRTHTGEKPFICKICDYKCVEKGRLNLHLRTHNGEKPFTCEICDHKCAEKHSLKIHMRTHTGEKPFVCDICAYKCAQKQGLKVHLRTHTGEKPFECEICHYKCAHKSGLKDHLKTHSGEKLFICRICDYKCARNDRLKRHLKIHIGERAFKCEICDYKCIEKESLKRHLKIHTGEKPHVCEICDYKSALKGDLNRHLKIHTKETPFVCELCDKKFTRKMNFKLHLKIHTSKVPLVCKICAYKCANKASLKNHVFSHTGAKLFACEKCDYKCTRKGTLKRHLLIHTGEKSYACEVCDYKCARKEELKRHLKIHTGERPFECDICDYKCIQKGSLNRHLRTHTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-