Rful008909.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:106645132-106647484[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 1.3e-05 0.00036 21.6 0.7 1 23 90 112 90 112 0.99 2 24 0.0035 0.1 13.9 0.9 1 23 118 140 118 140 0.98 3 24 0.0014 0.041 15.2 1.4 1 23 146 168 146 168 0.97 4 24 0.00035 0.01 17.1 0.6 1 23 177 199 177 199 0.98 5 24 7 2e+02 3.6 1.5 1 23 205 227 205 227 0.95 6 24 0.00018 0.0053 18.0 5.0 1 23 233 255 233 255 0.99 7 24 0.0014 0.041 15.2 1.2 1 23 261 283 261 283 0.97 8 24 0.034 0.99 10.8 4.1 1 23 289 311 289 311 0.98 9 24 0.00055 0.016 16.5 1.4 1 23 317 339 317 339 0.98 10 24 0.0005 0.015 16.6 0.2 1 20 345 364 345 367 0.93 11 24 0.00071 0.02 16.1 1.6 1 23 373 395 373 395 0.99 12 24 0.0041 0.12 13.7 1.6 1 23 401 423 401 423 0.97 13 24 0.008 0.23 12.8 1.1 1 23 429 452 429 452 0.94 14 24 0.0076 0.22 12.9 0.1 1 23 459 481 459 481 0.96 15 24 0.2 5.6 8.5 1.1 1 23 487 509 487 509 0.98 16 24 0.0044 0.13 13.7 0.4 1 23 519 541 519 541 0.98 17 24 0.014 0.41 12.0 1.1 1 23 547 569 547 569 0.98 18 24 0.0059 0.17 13.2 0.4 1 23 575 597 575 597 0.97 19 24 0.00098 0.028 15.7 2.0 1 23 603 625 603 625 0.98 20 24 5.4e-05 0.0016 19.7 0.6 1 23 631 653 631 653 0.98 21 24 0.22 6.3 8.3 3.9 3 23 661 681 659 681 0.96 22 24 0.0005 0.014 16.6 1.6 1 23 687 709 687 709 0.98 23 24 0.015 0.44 11.9 3.2 1 23 715 737 715 737 0.98 24 24 0.24 7.1 8.2 0.3 1 23 743 765 743 765 0.98
Sequence Information
- Coding Sequence
- ATGCATAAAATTGAGTACACAGCTGAATTAGCTGTTCTAAACACTGTAATTGATTGCCAGAATTTAACTTCTGAATTTTCTTGTAAAATAGAAAATGACCATACCGAGGGGAAAATTAAAACTGAAAATTTTGACTACGATTTAGAAGAACTGCACCATTCTGTTGACATTAAAGATGAGGAAGGAAATATGTCGACTACGGTCGTAATTGCACACGAGAACAATATTTTACGCCATTTAACTTCTCACTTTGCGGATAAAAAACGATACACGTGTGAAATTTGCGACTACAGCACCGTAGAAAGAAGCAACCTGAAAAAGCATTTAAAAATTCACACGGATGACAAGCCATTCCCCTGTGGCTTTTGCGACTATAGAGGTAAACGTAGAAATGACTTGAAGGTACATTTACAAAAACATTCGGAAGGAAAGCAATTTGCTTGTAAAATTTGTGAGTATAAAACAAAATATAAAGGTTACCTCCAAACACACCTCAAAATTCACATGGGTACAAAGACGGGAAAGCCGTTTATGTGTGATATTTGCAACTACGTTACTAAAAAAAAAAGTGATTTTGCTGTCCATGTGAGGAGCCACACAGGTGGAAAACTGTTTGAGTGTCAACTATGTTCGTATAAAACCACCATGAGGAAAATTTTGAACCAGCACTTATTTGTTCACACGAATAGGAAGCCGTTTAAATGTGAGCTGTGTAATTATCGTTGTAAACGGAAATCGTACTTAGCCACTCACGTAAGAACTCACACACAAGGAAAACCGTTTTTTTGTGAAATTTGTGACTACAAAACTAGTACGAGCCTGATGTTGCAGAATCACTTAAAAATGCACAACTTCGAAAAGCCATTTACGTGTCAAGTTTGTGATTACAAGACTCACAATAAGAGGTCTCTAGATCGCCATTTGAAACTTCACGCGGATGGTACGTCGTTTGAGTGTGCTTCTTGTGATTATAAAAGTAAATACAAAAATAATTTGCGGGCACATATAAGAAGGCACACAGGTGAAAAACCGTTCGAGTGTCAAACGTGCGGCCTCCGATTTGTGGAAAGCAGCGAATTGACTAGGCATTTACCGGTGCACACCGGAGAAAAATCGTTTAGATGCGAAATGTGCAGTTATGGTTCAAATAGGAAAGATTTATTAAGGCAACATTTAAAAACTCACACTGGTGAAAAACCGTTCGCTTGTGACATTTGCGACTACAAAACTTCGCGTAAACATGATCTGGGGATTCACTCAAAAACGCACTCCCACGAAAAGCCATTCGCGTGCGAAATTTGCAACTTTAAAACTGCGCAGAAAGGAAACCTTAAAACACATTTTATTAAAAAGCACACCGAAGGAAAGCGGTGGTACCCATGTGAAGTGTGCGACTACAGTACTGAATCGGAAGTAAACTTGCAAATTCATTCCAGCAGTCACACCAGCGGAAAATTCTTCTCTTGTGATTTTTGCGCTTACCAAAGTATTCGCGAAGCCAATTTTAGCAAGCACTTGAAAAGTCATCTGATGAAGGAAGTAAACGAAAAGTCGTTCGTATGCGAATTTTGCGGCTTGAAACTTCAAAACAAAGGAAGTTTTGAAATCCATTTAAGAATGCATACAGGGGAAAAGCCTTTTTCGTGCAGAACTTGCGATTTTAGAACGGCAGGTAAACCAAATTTAAGAATGCATTTGAAAACTCACACAAATGAAAAACCGTTTGCTTGTGCGATTTGTGATTACAGGGCGAGGTTTAAGAGTAAGTTGGATGTTCATTTAAGAACCCACACGGGCGAAAAGCCGTTCCCTTGTACAATTTGTGACTTTCGAAGTGCAACCAGGCACGATTTAAAATCCCACGTGAAAACCCATACAGGTGAAAAACCGTTCGTGTGCGTTACTTGTGGTTACAGAACTTCCCAAAAAAGTAACCTGATGAATCACGTGAAAATTCACCTGAGCGAAAAGCCGTTAGCGTGTAAAATTTGCGGTTACAGATGTTTGAAGAAAAGTAGCCTAGCGAATCATTTGAAACACCATTCGGGTGAAAATCGGTTCGTGTGTGAAATTTGTGGTTACAGTTGCTTGTACAAACGTAATCTAACAAATCACATGATGGTTCACACGGATGCGAAGCGATTTTCTTGCGAAATTTGTGATTACAGTCATTCAAAAAAAAGTTTTCTAACGAATCATTTAAAAATTCACACCGCTGAAAAATTATTCAGGTGTGCAAGTTGTGAGTATGAAACTATTAATAAGAAGAGATTAATAGTTCATTTGCAAGTGCATAAAACATAA
- Protein Sequence
- MHKIEYTAELAVLNTVIDCQNLTSEFSCKIENDHTEGKIKTENFDYDLEELHHSVDIKDEEGNMSTTVVIAHENNILRHLTSHFADKKRYTCEICDYSTVERSNLKKHLKIHTDDKPFPCGFCDYRGKRRNDLKVHLQKHSEGKQFACKICEYKTKYKGYLQTHLKIHMGTKTGKPFMCDICNYVTKKKSDFAVHVRSHTGGKLFECQLCSYKTTMRKILNQHLFVHTNRKPFKCELCNYRCKRKSYLATHVRTHTQGKPFFCEICDYKTSTSLMLQNHLKMHNFEKPFTCQVCDYKTHNKRSLDRHLKLHADGTSFECASCDYKSKYKNNLRAHIRRHTGEKPFECQTCGLRFVESSELTRHLPVHTGEKSFRCEMCSYGSNRKDLLRQHLKTHTGEKPFACDICDYKTSRKHDLGIHSKTHSHEKPFACEICNFKTAQKGNLKTHFIKKHTEGKRWYPCEVCDYSTESEVNLQIHSSSHTSGKFFSCDFCAYQSIREANFSKHLKSHLMKEVNEKSFVCEFCGLKLQNKGSFEIHLRMHTGEKPFSCRTCDFRTAGKPNLRMHLKTHTNEKPFACAICDYRARFKSKLDVHLRTHTGEKPFPCTICDFRSATRHDLKSHVKTHTGEKPFVCVTCGYRTSQKSNLMNHVKIHLSEKPLACKICGYRCLKKSSLANHLKHHSGENRFVCEICGYSCLYKRNLTNHMMVHTDAKRFSCEICDYSHSKKSFLTNHLKIHTAEKLFRCASCEYETINKKRLIVHLQVHKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -