Rful011667.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:4378575-4386705[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.075 2.2 9.8 6.3 1 23 107 129 107 129 0.98
2 20 0.00014 0.0039 18.4 2.2 1 23 135 157 135 157 0.99
3 20 0.00058 0.017 16.4 3.6 1 23 163 185 163 185 0.98
4 20 0.0056 0.16 13.3 5.9 1 23 191 213 191 213 0.98
5 20 0.00013 0.0037 18.5 0.5 1 23 219 241 219 241 0.97
6 20 0.0032 0.092 14.1 2.8 1 23 247 270 247 270 0.96
7 20 0.00021 0.0061 17.8 4.0 1 23 276 298 276 298 0.98
8 20 0.028 0.81 11.1 0.3 1 23 304 326 304 326 0.97
9 20 4.2e-05 0.0012 20.0 0.7 1 23 332 354 332 354 0.98
10 20 0.00015 0.0043 18.3 2.9 1 23 360 382 360 382 0.99
11 20 0.00024 0.0069 17.6 1.7 3 23 390 410 388 410 0.98
12 20 0.0021 0.061 14.6 4.4 2 23 417 439 416 439 0.95
13 20 2.1e-05 0.00059 21.0 3.2 1 23 445 467 445 467 0.99
14 20 0.016 0.45 11.9 0.8 1 23 473 496 473 496 0.96
15 20 0.0006 0.017 16.4 4.1 1 23 502 524 502 524 0.98
16 20 0.0028 0.081 14.3 5.7 1 23 530 552 530 552 0.98
17 20 0.011 0.32 12.4 3.2 1 23 558 581 558 581 0.96
18 20 0.0003 0.0086 17.3 3.7 1 23 587 609 587 609 0.99
19 20 0.00085 0.025 15.9 2.5 1 23 615 637 615 637 0.98
20 20 0.00027 0.0079 17.4 1.8 1 23 643 665 643 665 0.98

Sequence Information

Coding Sequence
ATGAATAATGCGGTGCTATTAGAAGAACCAGAAAAACAAGAAGTGGAAGGCATGAACTTCAAGCTCGAAGACCTACATGGCTTTATCAACATTAAGGAGGAGACTTCAATTAGCGAAACTCAATTGGACCAATATTGCGAAACAGCAATATGCAAACAATTTGAATATGGGGAAACTTCAAGTCCTTCATACAACTACTCTCAAATTAAGGTCGAAAATTCAAAAATTGAGTTGACCTTGGAAGATTTGCATCATTCAATTGACATTAAAGAAGAGACTTCCATTTCAGAATGCATAACACAAATTAACGATAAACCGTTTTCTTGCGAATTTTGTGAATATAGATGTAAACATCAAAGAATGCTAGAAATTCATTCGAGAACTCATACAGGAGAAAAGCCATATTCGTGTGAAGTTTGTGGCTTTAAATGTGCACGTATAGAATATTTAAAAAGGCATTTAAGAACTCATACAGGCGAGAGGCCGTTTTCGTGTGAAATATGTGATTACAAATGTGCACTAAAAGCACATTTAAAAGATCACTTAAGAACTCATATGCACGAGAAGTCTTTCACTTGCCATATTTGTGGTTGCAAATGCGCCCGTGAAAGAACCCTAAAAATTCATTTGCAAATTCACATGGGCGGGAAACCTTTCGCATGTCAAATTTGTGACTACAAAGCTACACAAAGGGGAGAATTAAAAACTCATTTAAGAACTCATACAGGCGAGAAGCCGTTCAGATGTGATATTTGTGACTACGAATGTGCACACAAAGTAAGTTTGAAAACTCATGTTATAAGAAGTCATGGGGGTGAGACCCCGTTTACGTGTGAAATTTGCGACCATAAATGCGCAACGAAAGGGTATTTAAAAAATCACTTAAGAATTCATTCGGGCCAGAAACCTTTTATATGCGAAATATGCGGGTATAAATGTGCACAAAAGGCAATTTTAGAAATTCATTCCAGAATTCACTCAGGGGTCAAGCCTTTTATGTGCCAAATTTGTGACTACAAAAGTGTAGATAGGGGAAGTTTAAATAGGCATTTAAGAACCCACTTCAACGAGAAACCGTTCAGATGTGAAATTTGCGAATTCAAATGTGCAAGCAAGACAAATTTAAAAGTTCATATAAAAACTCACACAGGGGAAAAACCGTTTGGATGTAACATTTGTGATTACAAATGTGGCAATAATTCGAGTTTAAAAATTCACATGCTAACCCATACAGGGGAAAAACCGTGTAGGTGTGAAATTTGTGACTATAAATGTGCACACAAGGCAAGTCTAAAAATTCATATGATACGAGCGCATGACGGTGTAGCTCCGTTTAAATGTGAAATTTGTGGGTATAAATGTACAAATAACACAACTTTAAAAATTCATGTTAGAACCCATACTTCCGAGAAACCGTATGCGTGTGAAAATTGTAGCTACAAGTCTGCACACAAAGAAAGTTTAAAAGGTCACATGATAAAAGCTCATGCCGGCGAGACCCCGTTTACTTGCGAAATTTGTGACTATAAATGCGCAAGTCAAAAGCAACTAAAAAATCATTTCCAAACCCACACGGGAGACAAGCCCTTTATTTGCGCAATTTGCGGCCACAAATGTGCTCAAAAATGTGATTTAAAATCGCATTTAAGGACGCATACGGGGGAAAAACCGTATAGTTGTGTAATTTGCGACTATAAATGTGCACATAAGGTAAGTTTAAAAACTCACGTTATTAGAACACACGGAGGCGAGACACCGTTTAGGTGTGAAATTTGTGGGCATAAATGTGCAACGAAAGGATATTTAGATAATCATCTGAGAACCCACTCGGGTGATAAACCGTTCAGATGTGAAAATTGTGACTTTAAATGTGCACGTAAAGGAGACTTAAAACTTCATCTGATGAGTCATAGGGGTGACAAACCTTTTTCATGCCTAATTTGTGACTACAAATGTGCACAAAGAGGAGGTTTAAACAGACATTTAAAGACTCATAAGCGAGAAACCGTAACATGA
Protein Sequence
MNNAVLLEEPEKQEVEGMNFKLEDLHGFINIKEETSISETQLDQYCETAICKQFEYGETSSPSYNYSQIKVENSKIELTLEDLHHSIDIKEETSISECITQINDKPFSCEFCEYRCKHQRMLEIHSRTHTGEKPYSCEVCGFKCARIEYLKRHLRTHTGERPFSCEICDYKCALKAHLKDHLRTHMHEKSFTCHICGCKCARERTLKIHLQIHMGGKPFACQICDYKATQRGELKTHLRTHTGEKPFRCDICDYECAHKVSLKTHVIRSHGGETPFTCEICDHKCATKGYLKNHLRIHSGQKPFICEICGYKCAQKAILEIHSRIHSGVKPFMCQICDYKSVDRGSLNRHLRTHFNEKPFRCEICEFKCASKTNLKVHIKTHTGEKPFGCNICDYKCGNNSSLKIHMLTHTGEKPCRCEICDYKCAHKASLKIHMIRAHDGVAPFKCEICGYKCTNNTTLKIHVRTHTSEKPYACENCSYKSAHKESLKGHMIKAHAGETPFTCEICDYKCASQKQLKNHFQTHTGDKPFICAICGHKCAQKCDLKSHLRTHTGEKPYSCVICDYKCAHKVSLKTHVIRTHGGETPFRCEICGHKCATKGYLDNHLRTHSGDKPFRCENCDFKCARKGDLKLHLMSHRGDKPFSCLICDYKCAQRGGLNRHLKTHKRETVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-